Literature DB >> 30605323

High-Precision Electrochemical Measurements of the Guanine-, Mismatch-, and Length-Dependence of Electron Transfer from Electrode-Bound DNA Are Consistent with a Contact-Mediated Mechanism.

Philippe Dauphin-Ducharme1,2, Netzahualcóyotl Arroyo-Currás3, Kevin W Plaxco1,2.   

Abstract

Despite 25 years' effort, serious questions remain regarding the mechanism(s) underlying electron transfer through (or from) electrode-bound double-stranded DNA. In part this is because a control experiment regarding the putatively critical role of guanine bases in the most widely proposed transport mechanism (hopping from guanine to guanine through the π-stack) appears to be lacking from the prior literature. In response, we have employed chronoamperometry, which allows for high-precision determination of electron transfer rates, to characterize transfer to a redox reporter appended onto electrode-bound DNA duplexes. Specifically, we have measured the effects of guanines and base mismatches on the electron transfer rate associated with such constructs. Upon doing so, we find that, counter to prior reports, the transfer rate is, to within relatively tight experimental confidence intervals, unaffected by either. Parallel studies of the dependence of the electron transfer rate on the length of the DNA suggest that transfer from this system obeys a "collision" mechanism in which the redox reporter physically contacts the electrode surface prior to the exchange of electrons.

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Year:  2019        PMID: 30605323      PMCID: PMC6540082          DOI: 10.1021/jacs.8b11341

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  49 in total

Review 1.  Electrochemistry at DNA-modified surfaces: new probes for charge transport through the double helix.

Authors:  N M Jackson; M G Hill
Journal:  Curr Opin Chem Biol       Date:  2001-04       Impact factor: 8.822

2.  Charge hopping in DNA.

Authors:  Y A Berlin; A L Burin; M A Ratner
Journal:  J Am Chem Soc       Date:  2001-01-17       Impact factor: 15.419

3.  Mutation detection by electrocatalysis at DNA-modified electrodes.

Authors:  E M Boon; D M Ceres; T G Drummond; M G Hill; J K Barton
Journal:  Nat Biotechnol       Date:  2000-10       Impact factor: 54.908

Review 4.  Electrochemical DNA sensors.

Authors:  T Gregory Drummond; Michael G Hill; Jacqueline K Barton
Journal:  Nat Biotechnol       Date:  2003-10       Impact factor: 54.908

5.  3'-Ferrocene-labeled oligonucleotide chains end-tethered to gold electrode surfaces: novel model systems for exploring flexibility of short DNA using cyclic voltammetry.

Authors:  Agnès Anne; Agnès Bouchardon; Jacques Moiroux
Journal:  J Am Chem Soc       Date:  2003-02-05       Impact factor: 15.419

6.  Electron transfer rates in DNA films as a function of tether length.

Authors:  T Gregory Drummond; Michael G Hill; Jacqueline K Barton
Journal:  J Am Chem Soc       Date:  2004-11-24       Impact factor: 15.419

7.  Study of single-nucleotide polymorphisms by means of electrical conductance measurements.

Authors:  Joshua Hihath; Bingqian Xu; Peiming Zhang; Nongjian Tao
Journal:  Proc Natl Acad Sci U S A       Date:  2005-11-11       Impact factor: 11.205

8.  DNA-bound redox activity of DNA repair glycosylases containing [4Fe-4S] clusters.

Authors:  Amie K Boal; Eylon Yavin; Olga A Lukianova; Valerie L O'Shea; Sheila S David; Jacqueline K Barton
Journal:  Biochemistry       Date:  2005-06-14       Impact factor: 3.162

9.  Single-nucleotide polymorphism detection with "wire-like" DNA probes that display quasi "on-off" digital action.

Authors:  Masahiko Inouye; Reona Ikeda; Masayoshi Takase; Takashi Tsuri; Junya Chiba
Journal:  Proc Natl Acad Sci U S A       Date:  2005-08-08       Impact factor: 11.205

10.  Dynamics of electron transport by elastic bending of short DNA duplexes. Experimental study and quantitative modeling of the cyclic voltammetric behavior of 3'-ferrocenyl DNA end-grafted on gold.

Authors:  Agnès Anne; Christophe Demaille
Journal:  J Am Chem Soc       Date:  2006-01-18       Impact factor: 15.419

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  8 in total

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Authors:  Julio Aleman; Tugba Kilic; Luis S Mille; Su Ryon Shin; Yu Shrike Zhang
Journal:  Nat Protoc       Date:  2021-04-28       Impact factor: 13.491

2.  Electrochemical Beacon Method to Quantify 10 Attomolar Nucleic Acids with a Semilog Dynamic Range of 7 Orders of Magnitude.

Authors:  Rahul Tevatia; Alicia Chan; Lance Oltmanns; Jay Min Lim; Ander Christensen; Michael Stoller; Ravi F Saraf
Journal:  Anal Chem       Date:  2021-11-29       Impact factor: 8.008

Review 3.  XNAs: A Troubleshooter for Nucleic Acid Sensing.

Authors:  Tanushree Mana; Budhaditya Bhattacharya; Hiya Lahiri; Rupa Mukhopadhyay
Journal:  ACS Omega       Date:  2022-04-28

4.  Surface Requirements for Optimal Biosensing with Disposable Gold Electrodes.

Authors:  Marjon Zamani; Victoria Yang; Lizi Maziashvili; Gang Fan; Catherine M Klapperich; Ariel L Furst
Journal:  ACS Meas Sci Au       Date:  2021-11-12

5.  DNA Electrochemistry: Charge-Transport Pathways through DNA Films on Gold.

Authors:  Adela Nano; Ariel L Furst; Michael G Hill; Jacqueline K Barton
Journal:  J Am Chem Soc       Date:  2021-07-26       Impact factor: 16.383

6.  Direct Detection and Discrimination of Nucleotide Polymorphisms Using Anthraquinone Labeled DNA Probes.

Authors:  Sarah A Goodchild; Rachel Gao; Daniel P Shenton; Alastair J S McIntosh; Tom Brown; Philip N Bartlett
Journal:  Front Chem       Date:  2020-05-12       Impact factor: 5.221

Review 7.  Sequence Does Not Matter: The Biomedical Applications of DNA-Based Coatings and Cores.

Authors:  Svetlana Batasheva; Rawil Fakhrullin
Journal:  Int J Mol Sci       Date:  2021-11-28       Impact factor: 5.923

8.  Spatial Separation of Plasmonic Hot-Electron Generation and a Hydrodehalogenation Reaction Center Using a DNA Wire.

Authors:  Sergio Kogikoski; Anushree Dutta; Ilko Bald
Journal:  ACS Nano       Date:  2021-12-07       Impact factor: 15.881

  8 in total

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