Literature DB >> 30605132

Introducing SEC-SANS for studies of complex self-organized biological systems.

Nicolai Tidemand Johansen1, Martin Cramer Pedersen1, Lionel Porcar2, Anne Martel2, Lise Arleth1.   

Abstract

Small-angle neutron scattering (SANS) is maturing as a method for studying complex biological structures. Owing to the intrinsic ability of the technique to discern between 1H- and 2H-labelled particles, it is especially useful for contrast-variation studies of biological systems containing multiple components. SANS is complementary to small-angle X-ray scattering (SAXS), in which similar contrast variation is not easily performed but in which data with superior counting statistics are more easily obtained. Obtaining small-angle scattering (SAS) data on monodisperse complex biological structures is often challenging owing to sample degradation and/or aggregation. This problem is enhanced in the D2O-based buffers that are typically used in SANS. In SAXS, such problems are solved using an online size-exclusion chromatography (SEC) setup. In the present work, the feasibility of SEC-SANS was investigated using a series of complex and difficult samples of membrane proteins embedded in nanodisc particles that consist of both phospholipid and protein components. It is demonstrated that SEC-SANS provides data of sufficient signal-to-noise ratio for these systems, while at the same time circumventing aggregation. By combining SEC-SANS and SEC-SAXS data, an optimized basis for refining structural models of the investigated structures is obtained.

Entities:  

Keywords:  SEC-SANS; membrane proteins; phospholipid nanodiscs; size-exclusion chromatography; small-angle X-ray scattering; small-angle neutron scattering

Mesh:

Substances:

Year:  2018        PMID: 30605132     DOI: 10.1107/S2059798318007180

Source DB:  PubMed          Journal:  Acta Crystallogr D Struct Biol        ISSN: 2059-7983            Impact factor:   7.652


  6 in total

1.  Interdomain Flexibility within NADPH Oxidase Suggested by SANS Using LMNG Stealth Carrier.

Authors:  Annelise Vermot; Isabelle Petit-Härtlein; Cécile Breyton; Aline Le Roy; Michel Thépaut; Corinne Vivès; Martine Moulin; Michael Härtlein; Sergei Grudinin; Susan M E Smith; Christine Ebel; Anne Martel; Franck Fieschi
Journal:  Biophys J       Date:  2020-07-03       Impact factor: 4.033

2.  Structure and dynamics of a nanodisc by integrating NMR, SAXS and SANS experiments with molecular dynamics simulations.

Authors:  Tone Bengtsen; Viktor L Holm; Lisbeth Ravnkilde Kjølbye; Søren R Midtgaard; Nicolai Tidemand Johansen; Giulio Tesei; Sandro Bottaro; Birgit Schiøtt; Lise Arleth; Kresten Lindorff-Larsen
Journal:  Elife       Date:  2020-07-30       Impact factor: 8.140

3.  Mg2+-dependent conformational equilibria in CorA and an integrated view on transport regulation.

Authors:  Nicolai Tidemand Johansen; Marta Bonaccorsi; Tone Bengtsen; Andreas Haahr Larsen; Frederik Grønbæk Tidemand; Martin Cramer Pedersen; Pie Huda; Jens Berndtsson; Tamim Darwish; Nageshewar Rao Yepuri; Anne Martel; Thomas Günther Pomorski; Andrea Bertarello; Mark Sansom; Mikaela Rapp; Ramon Crehuet; Tobias Schubeis; Kresten Lindorff-Larsen; Guido Pintacuda; Lise Arleth
Journal:  Elife       Date:  2022-02-07       Impact factor: 8.713

4.  Global fitting of multiple data frames from SEC-SAXS to investigate the structure of next-generation nanodiscs.

Authors:  Abigail Barclay; Nicolai Tidemand Johansen; Frederik Grønbæk Tidemand; Lise Arleth; Martin Cramer Pedersen
Journal:  Acta Crystallogr D Struct Biol       Date:  2022-03-11       Impact factor: 7.652

5.  Order and disorder-An integrative structure of the full-length human growth hormone receptor.

Authors:  Noah Kassem; Raul Araya-Secchi; Katrine Bugge; Abigail Barclay; Helena Steinocher; Adree Khondker; Yong Wang; Aneta J Lenard; Jochen Bürck; Cagla Sahin; Anne S Ulrich; Michael Landreh; Martin Cramer Pedersen; Maikel C Rheinstädter; Per Amstrup Pedersen; Kresten Lindorff-Larsen; Lise Arleth; Birthe B Kragelund
Journal:  Sci Adv       Date:  2021-06-30       Impact factor: 14.136

6.  Probing solution structure of the pentameric ligand-gated ion channel GLIC by small-angle neutron scattering.

Authors:  Marie Lycksell; Urška Rovšnik; Cathrine Bergh; Nicolai T Johansen; Anne Martel; Lionel Porcar; Lise Arleth; Rebecca J Howard; Erik Lindahl
Journal:  Proc Natl Acad Sci U S A       Date:  2021-09-14       Impact factor: 11.205

  6 in total

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