| Literature DB >> 30602655 |
Gabrielle Goodrum1, Martin Pelchat2.
Abstract
Hepatitis delta virus (HDV) is unique among animal viruses. HDV is a satellite virus of the hepatitis B virus (HBV), however it shares no sequence similarity with its helper virus and replicates independently in infected cells. HDV is the smallest human pathogenic RNA virus and shares numerous characteristics with viroids. Like viroids, HDV has a circular RNA genome which adopts a rod-like secondary structure, possesses ribozyme domains, replicates in the nucleus of infected cells by redirecting host DNA-dependent RNA polymerases (RNAP), and relies heavily on host proteins for its replication due to its small size and limited protein coding capacity. These similarities suggest an evolutionary relationship between HDV and viroids, and information on HDV could allow a better understanding of viroids and might globally help understanding the pathogenesis and molecular biology of these subviral RNAs. In this review, we discuss the host involvement in HDV replication and its implication for HDV pathogenesis.Entities:
Keywords: hepatitis delta virus; host–pathogen interaction; viral disruption of host processes
Mesh:
Substances:
Year: 2018 PMID: 30602655 PMCID: PMC6356607 DOI: 10.3390/v11010021
Source DB: PubMed Journal: Viruses ISSN: 1999-4915 Impact factor: 5.048
Figure 1Hepatitis delta virus genomic RNA, antigenomic RNA and mRNA. The delta ribozymes are represented by the green boxes on both strands and the cleavage sites are indicated by scissor symbols. The delta antigen (HDAg) open reading frame (ORF) is represented in the antigenome by the red box, the arrow on position 1630 indicates its transcription start site and the X in the ORF represents the ADAR-1 editing site at a location corresponding to the termination codon of HDAg-S.
Figure 2Hepatitis delta virus (HDV) replication model: symmetrical rolling circle. HDV genomic strand (blue) is used as a template to generate the antigenomic RNA using a host polymerase to generate a multimeric linear strand. This strand is self-cleaved by endogenous delta ribozymes (scissor symbols) and presumably ligated by a host enzyme to form the antigenomic monomeric strand (pink). The same steps are repeated on the antigenomic strands to produce a newly synthesized genomic strand. The genomic template is also used for the antigen mRNA synthesis. Question marks next to several RNAPs indicate that the involvement in HDV biology remains controversial.
Host protein interacting with HDV RNA and/or HDAgs.
| Host Protein (Cell Types Used) | Function | Interaction | Reference |
|---|---|---|---|
| Double-stranded RNA-activated protein kinase R (PKR) (HepG2, HeLa) | Phosphorylation (S117, S180, T182) | HDAg-S, RNA | [ |
| Casein Kinase II (CKII) (HuH-7) | Phosphorylation (S2, S213) | HDAg-S | [ |
| Protein Kinase C (PKC) (HuH-7) | Phosphorylation (S210) | HDAg-L | [ |
| Extracellular signal-related kinases 1 and 2 (ERK1/2) (HEK-293T) | Phosphorylation (S177) | HDAg-S | [ |
| Protein farnesyltransferase (FTase) (Cos-7, d H189, HuH-7, NIH3T3) | Isoprenylation with farnesyl (C211) | HDAg-L | [ |
| Protein arginine methyltransferase 1 (PRMT1) (HuH-7) | Methylation (R13) | HDAgs | [ |
| P300 cellular acetyltransferase (HeLa, HuH-7, and HepG2) | Acetylation (K72) | HDAgs | [ |
| Small ubiquitin-related modifier | Sumoylation of lysine residues | HDAg-S | [ |
| Isoform 1 (SUMO1) (HuH-7) | |||
| Ubc9 (HuH-7) | Sumoylation of lysine residues | HDAg-S | [ |
| Karyopherin (importin) 2α (BRL) | Nuclear import | HDAg-S | [ |
| Nuclear export signal-interacting protein (NESI) (HuH-7, HepG2, COS7) | Nuclear import | HDAg-L | [ |
| Lamin A/C (HuH-7) | Nuclear stability, chromatin structure and gene expression | HDAg-L | [ |
| Clathrin heavy chain (HepG2, COS7, HuH-7) | Exocytosis | HDAg-L | [ |
| Nucleophosmin (B23) (HuH-7 HepG2) | Nucleolar localization, shuttling, RNA synthesis/accumulation | HDAgs | [ |
| DRB sensitivity-inducing factor (DSIF) (HeLa) | Relieves transcriptional repression; stimulates elongation by RNAP II | HDAgs | [ |
| Delta interacting protein A (HEK-293) | Transcriptional regulation | HDAgs | [ |
| Yin Yang 1 (YY1) (HeLa, HuH-7, HepG2) | RNA synthesis/accumulation | HDAgs | [ |
| Histone H1e (COS7, HuH-7) | RNA synthesis/accumulation | HDAg-S | [ |
| MOV10 (HuH-7, HEK-293) | RNA remodeling | HDAgs | [ |
| Smad3 (HuH-7, Cos7) | Host gene expression | HDAgs | [ |
| c-Jun (HuH-7, Cos7) | Host gene expression | HDAgs | [ |
| TRAF2 (HEK-293, HuH-7) | Host gene expression | HDAgs | [ |
| ZNF326 (HEK-293) | Transcription elongation | HDAg-S | [ |
| CCAR1(HEK-293) | Helicase | HDAg-S | [ |
| CDC5L (HEK-293) | Helicase | HDAg-S | [ |
| Chromodomain helicase-DNA-binding protein 4 (CHD4) (HEK-293) | Remodeling of chromatin | HDAg-S | [ |
| Centrosome-associated protein 350 (CEP350) (HEK-293) | Microtubule-organization at the centrosome | HDAg-S | [ |
| Centrosomal protein 170kDa isoform alpha (HEK-293) | Microtubule organization | HDAg-S | [ |
| H2A and H4 Histones (HEK-293) | Histone components | HDAg-S | [ |
| Probable G-protein coupled receptor 179 precursor (HEK-293) | Signal transduction | HDAg-S | [ |
| SC35 (HuH-7) | Splicing factor | HDAg-S, gRNA | [ |
| Adenosine deaminase acting on RNA (ADAR 1) (HuH-7, HEK-293) | Post-transcriptional modification of HDV antigenome | agRNA | [ |
| Glyceraldehydes 3-phosphate dehydrogenase (GAPDH) (HeLa) | Enhances delta ribozyme activity | agRNA | [ |
| RNAP I (HeLa) | Antigenome synthesis | RNA | [ |
| RNAP II (HeLa) | Genome synthesis, mRNA synthesis, Antigenome synthesis | HDAg-S, RNA | [ |
| RNAP III (HeLa) | RNA | [ | |
| Polypyrimidine tract-binding protein associated splicing factor (PSF) (HEK-293, HuH-7) | Nuclear processes | RNA | [ |
| 54 kDa nuclear RNA-binding protein (p54nrb) (HEK-293, HeLa) | Nuclear processes | RNA | [ |
| Paraspeckle protein 1 (PSP1) (HEK-293) | RNA | [ | |
| Heterogeneous nuclear ribonucleoprotein L (hnRNPL) (HeLa) | mRNA processing | RNA | [ |
| Arginine/serine-rich splicing factor (ASF) (HeLa, HEK-293) | Splicing | RNA | [ |
| Eukaryotic elongation factor 1A1 (eEF1A1) (HeLa) | Ribosomal aa-tRNA transport, gene expression | RNA | [ |
List of host protein differentially expressed in the presence of HDV RNA and/or HDAgs.
| Host Protein (Cell Types Used) | Biological Function | Reference |
|---|---|---|
| P53 (HEK-293) | Tumor suppressor and the regulation of cell cycle | [ |
| Heat shock 10 kDa protein (HSPE) (HEK-293) | Chaperone, efficient protein folding | [ |
| ELAV-like protein 1(HEK-293) | c-myc stabilization | [ |
| Transportin 1 (HEK-293) | Receptor for nuclear localization signals | [ |
| Eukaryotic Translation Initiation Factor 3 Subunit D (EIF3D) (HEK-293) | Translation initiation factor activity | [ |
| Cofilin 1 (HEK-293) | ILK signaling pathway | [ |
| 14-3-3 σ (HEK-293) | Signal transduction | [ |
| FAM136A (HEK-293) | Nuclear-encoded mitochondrial gene | [ |
| BRI3BP (HEK-293) | Tumorigenesis, p53/TP53 stabilization | [ |
| Histone H1 binding protein (NASP) (HEK-293) | Signal transduction; Cell communication | [ |
| Triose phosphate isomerase (TPI) (HEK-293) | Metabolism; Energy pathways | [ |
| Polyadenylate binding protein (PABP) (HEK-293) | RNA metabolism | [ |
| Rho GDP dissociation inhibitor (GDI) (HEK-293) | GTPase activator | [ |
| Guanine nucleotide-binding protein (HEK-293) | Signal transduction pathway | [ |
| Brebrin 1 (HEK-293) | Cell growth and/or maintenance | [ |
| Keratine 8 (HEK-293) | Cell growth and/or maintenance | [ |
| Vinculin (HEK-293) | Cell growth and/or maintenance | [ |
| Lamin C (HEK-293) | Cell growth and/or maintenance | [ |
| Acetyl-CoA acetyltransferase (HEK-293) | Metabolism; Energy pathways | [ |
| Zinc finger protein 326 (HEK-293) | Regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism | [ |
| High mobility group box 1 (HEK-293) | Regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism | [ |
| Guanine nucleotide binding protein (HEK-293) | Signal transduction; Cell communication | [ |
| Serum albumin (HEK-293) | Transport | [ |
| Heterogeneous nuclear ribonuclearprotein D (hnRNP D) (HuH-7) | mRNA metabolism and transport | [ |
| Heat shock protein 105 (HSP105) (HuH-7) | Prevents the aggregation of misfolded proteins | [ |
| Annexin IV (HuH-7) | Regulation of early stages of apoptosis | [ |
| Proteasome activator (HuH-7) | Metabolism; energy pathways | [ |
| NADH2 dehydrogenase (ubiquinone) flavoprotein 1 precursor (HuH-7) | Metabolism; energy pathways | [ |
| Adenylate kinase 2B (HuH-7) | Metabolism; energy pathways | [ |
| Eukaryotic translation initiation factor 2 subunit 1 (HuH-7) | Protein metabolism | [ |
| Serine (or cysteine) proteinase inhibitor (HuH-7) | Protein metabolism | [ |
| Heat shock 60 kDa protein | Protein metabolism | [ |
| CKAP4 protein (HuH-7) | Cell growth and/ or maintenance | [ |
| Tubulin alpha 6 (HuH-7) | Cell growth and/ or maintenance | [ |
| Keratin 8 & Keratin, type I cytoskeletal 19 (HuH-7) | Cell growth and/ or maintenance | [ |
| Dihydropyrimidinase related | Neurogenesis | [ |
| Protein 2 (HuH-7) | ||
| TRIM 28 protein (HuH-7) | Regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism | [ |
| DNA structure specific endonuclease FEN1 (HuH-7) | Regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism | [ |
| Ribonuclearprotein La (HuH-7) | Regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism | [ |
| High density lipoprotein binding protein (vigilin) (HEK-293, HuH-7) | Transport | [ |
| N-ethylmaleimide-sensitive factor attachment protein (HEK-293, HuH-7) | Transport | [ |
| Sorting nexin 5 (HEK-293, HuH-7) | Transport | [ |
| Dopamine receptor interacting protein 4 (HuH-7) | Apoptosis | [ |
| Interferon β/λ (HepG2, HuH-7, HepaRG) | Signaling proteins | [ |
| Interleukine 8 (IL8) (HEK-293) | Antiviral protein | [ |
| Nuclear Enriched Associated Transcript 1 (Neat1) (HEK-293) | Scaffold protein | [ |
| Clusterin (HuH-7) | Role in tumorigenesis | [ |