| Literature DB >> 30595983 |
Xue Xu1, Qiang Zhang2, Huanqiu Song3, Zhuo Ao2, Xiang Li2, Cheng Cheng3, Maojing Shi3, Fengying Fu4, Chengtao Sun5, Yuansheng Liu3, Dong Han2.
Abstract
BACKGROUND: Patients with dilated cardiomyopathy, increased ventricular volume, pressure overload or dysynergistic ventricular contraction and relaxation are susceptible to develop serious ventricular arrhythmias (VA). These phenomena are primarily based on a theory of mechanoelectric feedback, which reflects mechanical changes that produce alterations in electrical activity. However, very few systematic studies have provided evidence of the preventive effects of artemisinin (ART) on VA in response to left ventricle (LV) afterload increases. MicroRNAs (miRNAs) are endogenous small non-coding RNAs that regulate expression of multiple genes by suppressing mRNAs post-transcriptionally. AIMS: The aims of this study were to investigate preventive effects of ART on mechanical VA and the underling molecular mechanisms of differentially expressed miRNAs (DEMs).Entities:
Keywords: Afterload increase; Artemisinin; Bioinformatics; Ventricular arrhythmia; miRNA
Year: 2018 PMID: 30595983 PMCID: PMC6304267 DOI: 10.7717/peerj.6110
Source DB: PubMed Journal: PeerJ ISSN: 2167-8359 Impact factor: 2.984
Figure 1Effects of sham TAC surgery and TAC surgery on LVPs.
(A) LVP in rats of group 1 after sham TAC surgery did not show obvious changes. The onset of sham TAC surgery is noted by the arrow. (B) Elevated LVP in response to LV afterload increases (induced by TAC surgery) in rats of group 2. The onset of TAC surgery is noted by an arrow. LVP, left ventricular pressure; TAC, transverse aortic constriction.
Figure 2ECG categories that appeared in this experiment.
(A) Sinus rhythm; (B) VT, ventricular tachycardia; (C) PVC, premature ventricular contraction; (D) Bidirectional VT; (E) Type I second degree AVB; (F) two to one second degree AVB. AVB, atrioventricular block.
Figure 3Effects of ART and VER on PR and QTc intervals before TAC surgery.
(A) PR intervals in seven groups pretreated with saline or drugs before TAC surgery. (B) QTc intervals in seven groups pretreated with saline or drugs before TAC surgery. **p < 0.01 vs group 1. TAC, transverse aortic constriction.
Figure 4Effects of ART and VER on VAS and number of rats that presented with type I second degree AVB and two to one second degree AVB in all groups.
(A) Obvious effects of ART (75, 150, 300 and 600 mg/kg) and VER (1 mg/kg) on VAS in response to LV afterload increases. (B) Number of rats that presented with type I second degree AVB and two to one second degree AVB in each group. **p < 0.01 vs group 1, ##p < 0.01 vs group 2. VAS, ventricular arrhythmia score; AVB, atrioventricular block.
Figure 5Hierarchical cluster analysis of 16 DEMs related to the preventive effects of ART on mechanical VA in response to LV afterload increases based on expressions of six tissue samples in groups 2 and 4.
Red represents increased miRNA expression and blue represents reduced miRNA expression. MiRNAs limited to |log2(foldchange)| > 1 and p < 0.05 were displayed in the heat map. DEMs, differentially expressed miRNAs.
Sixteen significantly differentially expressed miRNAs between group 2 and group 4.
| miRNA_ID | Up/down | Log2(foldchange) | |
|---|---|---|---|
| rno-miR-200a-3p | Up | 7.4174 | 3.80E-05 |
| rno-miR-341 | Up | 6.9806 | 7.05E-05 |
| rno-miR-21-3p | Up | 6.4468 | 0.000449764 |
| rno-miR-202-5p | Up | 7.5349 | 0.001903303 |
| rno-miR-370-3p | Up | 6.6244 | 0.010916208 |
| rno-miR-337-5p | Up | 6.541 | 0.012188281 |
| rno-miR-127-5p | Up | 6.4321 | 0.012733603 |
| rno-miR-495 | Up | 5.8694 | 0.016790488 |
| rno-miR-16-3p | Up | 5.8076 | 0.018679521 |
| rno-miR-204-5p | Up | 1.1891 | 0.020165031 |
| rno-miR-743b-5p | Up | 7.166 | 0.022456989 |
| rno-miR-6319 | Down | −5.7876 | 0.02430747 |
| rno-miR-134-5p | Up | 1.4378 | 0.035235138 |
| rno-miR-434-5p | Up | 1.4075 | 0.03707316 |
| rno-miR-743a-5p | Up | 6.6054 | 0.0412662 |
| rno-miR-375-3p | Up | 6.8176 | 0.046167278 |
Figure 6GO categories and KEGG analysis of DEMs.
(A) Biological processes, cellular components and molecular functions of the candidate target genes which were enriched by GO categories. (B) Signaling pathways enriched from candidate target genes using KEGG analysis. GO, gene ontology; KEGG, Kyoto Encyclopedia annotation of Genes and Genomes; miRNA, microRNA. DEMs, differentially expressed miRNAs.
Enriched KEGG pathway analysis of the predicted target genes of 16 differentially expressed miRNAs.
| Pathway name | Gene number | |
|---|---|---|
| Proteoglycans in cancer | 43 | 0.00103411 |
| MAPK signaling pathway | 50 | 0.001562279 |
| Wnt signaling pathway | 30 | 0.005403972 |
| Lysosome | 26 | 0.011992977 |
| Hippo signaling pathway | 30 | 0.012670714 |
| Amphetamine addiction | 15 | 0.019603748 |
| Axon guidance | 24 | 0.312966213 |
| cGMP-PKG signaling pathway | 31 | 0.022057892 |
| GnRH signaling pathway | 19 | 0.023634904 |
| Adherens junction | 16 | 0.026023104 |
| Adrenergic signaling in cardiomyocytes | 27 | 0.029128596 |
| Dopaminergic synapse | 24 | 0.034215625 |
| GABAergic synapse | 18 | 0.03436474 |
| Hepatitis B | 25 | 0.039361553 |
| Ubiquitin mediated proteolysis | 25 | 0.044555283 |
| Hedgehog signaling pathway | 10 | 0.048989119 |
| Glutamatergic synapse | 21 | 0.049250163 |
Figure 7MiRNA-mRNA network.
Blue nodes represent miRNAs, while pink nodes represent mRNAs. The more connections between miRNAs and genes, the more links within the network.
Figure 8The number of genes linked to target genes.
The vertical axis represents number of genes linked to the target genes, and horizontal axis represents the name of target genes.
Target genes that are controlled and regulated by more than four microRNAs.
| Target genes | miRNA counts | miRNA |
|---|---|---|
| Rere | 5 | rno-miR-200a-3p, rno-miR-202-5p, rno-miR-204-5p, rno-miR-370-3p, rno-miR-495 |
| Pcdha5 | 4 | rno-miR-127-5p, rno-miR-21-3p, rno-miR-495, rno-miR-743a-5p |
| Ntrk2 | 4 | rno-miR-204-5p, rno-miR-21-3p, rno-miR-495, rno-miR-6319 |
| Pcdha6 | 4 | rno-miR-127-5p, rno-miR-21-3p, rno-miR-495, rno-miR-743a-5p |
| Zfhx4 | 4 | rno-miR-202-5p, rno-miR-204-5p, rno-miR-495, rno-miR-743b-5p |
| Pcdha4 | 4 | rno-miR-127-5p, rno-miR-21-3p, rno-miR-495, rno-miR-743a-5p |
| Pcdha3 | 4 | rno-miR-127-5p, rno-miR-21-3p, rno-miR-495, rno-miR-743a-5p |
| Pcdha7 | 4 | rno-miR-127-5p, rno-miR-21-3p, rno-miR-495, rno-miR-743a-5p |
| Tp63 | 4 | rno-miR-204-5p, rno-miR-21-3p, rno-miR-6319, rno-miR-743a-5p |
| Pcdha1 | 4 | rno-miR-127-5p, rno-miR-21-3p, rno-miR-495, rno-miR-743a-5p |
| Pcdha13 | 4 | rno-miR-127-5p, rno-miR-21-3p, rno-miR-495, rno-miR-743a-5p |
| Dek | 4 | rno-miR-127-5p, rno-miR-341, rno-miR-6319, rno-miR-743a-5p |
| Slc24a2 | 4 | rno-miR-134-5p, rno-miR-16-3p, rno-miR-495, rno-miR-6319 |
| Naa15 | 4 | rno-miR-202-5p, rno-miR-204-5p, rno-miR-21-3p, rno-miR-370-3p |
| Pcdhac1 | 4 | rno-miR-127-5p, rno-miR-21-3p, rno-miR-495, rno-miR-743a-5p |
| Pcdha2 | 4 | rno-miR-127-5p, rno-miR-21-3p, rno-miR-495, rno-miR-743a-5p |
| Pcdha12 | 4 | rno-miR-127-5p, rno-miR-21-3p, rno-miR-495, rno-miR-743a-5p |
| Pcdhac2 | 4 | rno-miR-127-5p, rno-miR-21-3p, rno-miR-495, rno-miR-743a-5p |
| Itpr1 | 4 | rno-miR-127-5p, rno-miR-204-5p, rno-miR-21-3p, rno-miR-743b-5p |
| Pcdha10 | 4 | rno-miR-127-5p, rno-miR-21-3p, rno-miR-495, rno-miR-743a-5p |
| Nr3c1 | 4 | rno-miR-16-3p, rno-miR-200a-3p, rno-miR-204-5p, rno-miR-21-3p |
| Rapgef2 | 4 | rno-miR-127-5p, rno-miR-16-3p, rno-miR-200a-3p, rno-miR-202-5p |
| Rhoq | 4 | rno-miR-134-5p, rno-miR-495, rno-miR-6319, rno-miR-743b-5p |
| Klhl24 | 4 | rno-miR-134-5p, rno-miR-204-5p, rno-miR-370-3p, rno-miR-6319 |
| Synj2bp | 4 | rno-miR-134-5p, rno-miR-204-5p, rno-miR-21-3p, rno-miR-495 |
Note:
miR, micro RNA.
Relative quantifications of 16 differentially expressed miRNAs expressions detected by RT-qPCR.
| DEMs | Group 2 | Group 4 | |
|---|---|---|---|
| rno-miR-370-3p | Not detected | Not detected | Not detected |
| rno-miR-200a-3p | 1 ± 0.21 | 7.65 ± 2.33 | 0.038 |
| rno-miR-127-5p | 1 ± 0.19 | 20.27 ± 3.34 | 0.01 |
| rno-miR-200b-3p | 1 ± 0.20 | 6.77 ± 1.80 | 0.03 |
| rno-miR-434-5p | 1 ± 0.17 | 3.68 ± 1.04 | 0.044 |
| rno-miR-743b-5p | 1 ± 0.14 | 2.09 ± 0.32 | 0.005 |
| rno-miR-341 | 1 ± 0.05 | 7.47 ± 1.15 | 0.01 |
| rno-miR-495 | 1 ± 0.43 | 5.61 ± 0.69 | 0.001 |
| rno-miR-337-5p | 1 ± 0.06 | 3.55 ± 0.36 | 0.006 |
| rno-miR-300-3p | 1 ± 0.11 | 31.03 ± 0.75 | 0 |
| rno-miR-6319 | 1 ± 0.16 | 1.40 ± 0.09 | 0.018 |
| rno-miR-21-3p | 1 ± 0.14 | 0.15 ± 0.02 | 0.001 |
| rno-miR-16-3p | 1 ± 0.13 | 2.49 ± 0.26 | 0.001 |
| rno-miR-204-5p | 1 ± 0.20 | 1.13 ± 0.07 | 0.347 |
| rno-miR-743b-5p | 1 ± 0.16 | 9.03 ± 1.59 | 0.012 |
| rno-miR-134-5p | 1 ± 0.16 | 20.12 ± 3.10 | 0 |