Literature DB >> 30583962

Uncovering the Structural Basis of a New Twist in Protein Ubiquitination.

Kedar Puvar1, Zhao-Qing Luo2, Chittaranjan Das3.   

Abstract

Members of the SidE effector family from Legionella pneumophila represent a new paradigm in the ubiquitin world. These enzymes catalyze ubiquitination of target proteins via a mechanism different from that of conventional E1-E2-E3 biochemistry and play important roles in L. pneumophila virulence. They combine mono-ADP-ribosylation and phosphodiesterase activities to attach ubiquitin onto substrates, in great contrast to the orthodox pathway. A series of recent structural and mechanistic studies have clarified the action of these enzymes. Herein, we summarize the key insights into the structure and function of these proteins, emphasizing their modular nature, and discuss the biochemical implications of these proteins as well as areas of further exploration.
Copyright © 2018 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  ADP-ribosylation; Legionella; bacteria; effectors; signaling; ubiquitination

Mesh:

Substances:

Year:  2018        PMID: 30583962      PMCID: PMC6465118          DOI: 10.1016/j.tibs.2018.11.006

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  36 in total

1.  Structural basis of ubiquitin modification by the Legionella effector SdeA.

Authors:  Yanan Dong; Yajuan Mu; Yongchao Xie; Yupeng Zhang; Youyou Han; Yu Zhou; Wenhe Wang; Zihe Liu; Mei Wu; Hao Wang; Man Pan; Ning Xu; Cong-Qiao Xu; Maojun Yang; Shilong Fan; Haiteng Deng; Tianwei Tan; Xiaoyun Liu; Lei Liu; Jun Li; Jiawei Wang; Xianyang Fang; Yue Feng
Journal:  Nature       Date:  2018-05-23       Impact factor: 49.962

Review 2.  Diversity of bacterial manipulation of the host ubiquitin pathways.

Authors:  Yan Zhou; Yongqun Zhu
Journal:  Cell Microbiol       Date:  2014-11-22       Impact factor: 3.715

Review 3.  Legionella and Coxiella effectors: strength in diversity and activity.

Authors:  Jiazhang Qiu; Zhao-Qing Luo
Journal:  Nat Rev Microbiol       Date:  2017-07-17       Impact factor: 60.633

4.  IcmS-dependent translocation of SdeA into macrophages by the Legionella pneumophila type IV secretion system.

Authors:  J Patrick Bardill; Jennifer L Miller; Joseph P Vogel
Journal:  Mol Microbiol       Date:  2005-04       Impact factor: 3.501

Review 5.  Insights into the biogenesis, function, and regulation of ADP-ribosylation.

Authors:  Michael S Cohen; Paul Chang
Journal:  Nat Chem Biol       Date:  2018-02-14       Impact factor: 15.040

6.  Structural basis of functional diversification of the HD-GYP domain revealed by the Pseudomonas aeruginosa PA4781 protein, which displays an unselective bimetallic binding site.

Authors:  Serena Rinaldo; Alessandro Paiardini; Valentina Stelitano; Paolo Brunotti; Laura Cervoni; Silvia Fernicola; Carmela Protano; Matteo Vitali; Francesca Cutruzzolà; Giorgio Giardina
Journal:  J Bacteriol       Date:  2015-02-17       Impact factor: 3.490

7.  Toxicity and SidJ-Mediated Suppression of Toxicity Require Distinct Regions in the SidE Family of Legionella pneumophila Effectors.

Authors:  James C Havey; Craig R Roy
Journal:  Infect Immun       Date:  2015-06-22       Impact factor: 3.441

8.  Structure of a complex between Nedd8 and the Ulp/Senp protease family member Den1.

Authors:  David Reverter; Kenneth Wu; Tudeviin Gan Erdene; Zhen-Qiang Pan; Keith D Wilkinson; Christopher D Lima
Journal:  J Mol Biol       Date:  2005-01-07       Impact factor: 5.469

Review 9.  Phosphorylation and dephosphorylation of histidine residues in proteins.

Authors:  Susanne Klumpp; Josef Krieglstein
Journal:  Eur J Biochem       Date:  2002-02

10.  Structural basis of substrate recognition by a bacterial deubiquitinase important for dynamics of phagosome ubiquitination.

Authors:  Michael J Sheedlo; Jiazhang Qiu; Yunhao Tan; Lake N Paul; Zhao-Qing Luo; Chittaranjan Das
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-23       Impact factor: 11.205

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  8 in total

1.  Fluorescent Probes for Monitoring Serine Ubiquitination.

Authors:  Kedar Puvar; Aya M Saleh; Ryan W Curtis; Yiyang Zhou; Prasanth R Nyalapatla; Jiaqi Fu; Alexander R Rovira; Yitzhak Tor; Zhao-Qing Luo; Arun K Ghosh; Mary J Wirth; Jean Chmielewski; Tamara L Kinzer-Ursem; Chittaranjan Das
Journal:  Biochemistry       Date:  2020-03-27       Impact factor: 3.162

2.  Insights into Ubiquitin Product Release in Hydrolysis Catalyzed by the Bacterial Deubiquitinase SdeA.

Authors:  Michael J Sheedlo; Sebastian Kenny; Ivan S Podkorytov; Kwame Brown; Jia Ma; Shalini Iyer; Chad S Hewitt; Trent Arbough; Oleg Mikhailovskii; Daniel P Flaherty; Mark A Wilson; Nikolai R Skrynnikov; Chittaranjan Das
Journal:  Biochemistry       Date:  2021-02-14       Impact factor: 3.162

Review 3.  Cellular functions and molecular mechanisms of non-lysine ubiquitination.

Authors:  Amie J McClellan; Sophie Heiden Laugesen; Lars Ellgaard
Journal:  Open Biol       Date:  2019-09-18       Impact factor: 6.411

Review 4.  (ADP-ribosyl)hydrolases: structure, function, and biology.

Authors:  Johannes Gregor Matthias Rack; Luca Palazzo; Ivan Ahel
Journal:  Genes Dev       Date:  2020-02-06       Impact factor: 11.361

5.  Translocated Legionella pneumophila small RNAs mimic eukaryotic microRNAs targeting the host immune response.

Authors:  Tobias Sahr; Pedro Escoll; Christophe Rusniok; Sheryl Bui; Gérard Pehau-Arnaudet; Gregory Lavieu; Carmen Buchrieser
Journal:  Nat Commun       Date:  2022-02-09       Impact factor: 14.919

6.  New Global Insights on the Regulation of the Biphasic Life Cycle and Virulence Via ClpP-Dependent Proteolysis in Legionella pneumophila.

Authors:  Zhenhuang Ge; Peibo Yuan; Lingming Chen; Junyi Chen; Dong Shen; Zhigang She; Yongjun Lu
Journal:  Mol Cell Proteomics       Date:  2022-04-12       Impact factor: 7.381

Review 7.  Emerging Role of Ubiquitination in the Regulation of PD-1/PD-L1 in Cancer Immunotherapy.

Authors:  Xiaoli Hu; Jing Wang; Man Chu; Yi Liu; Zhi-Wei Wang; Xueqiong Zhu
Journal:  Mol Ther       Date:  2021-01-01       Impact factor: 11.454

Review 8.  Molecular Mimicry: a Paradigm of Host-Microbe Coevolution Illustrated by Legionella.

Authors:  Sonia Mondino; Silke Schmidt; Carmen Buchrieser
Journal:  mBio       Date:  2020-10-06       Impact factor: 7.867

  8 in total

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