Literature DB >> 30583320

[Drug-target protein interaction prediction based on AdaBoost algorithm].

Wanrong Gu1, Xianfen Xie2, Yichen He3, Ziye Zhang4.   

Abstract

The drug-target protein interaction prediction can be used for the discovery of new drug effects. Recent studies often focus on the prediction of an independent matrix filling algorithm, which apply a single algorithm to predict the drug-target protein interaction. The single-model matrix-filling algorithms have low accuracy, so it is difficult to obtain satisfactory results in the prediction of drug-target protein interaction. AdaBoost algorithm is a strong multiple classifier combination framework, which is proved by the past researches in classification applications. The drug-target interaction prediction is a matrix filling problem. Therefore, we need to adjust the matrix filling problem to a classification problem before predicting the interaction among drug-target protein. We make full use of the AdaBoost algorithm framework to integrate several weak classifiers to improve performance and make accurate prediction of drug-target protein interaction. Experimental results based on the metric datasets show that our algorithm outperforms the other state-of-the-art approaches and classical methods in accuracy. Our algorithm can overcome the limitations of the single algorithm based on machine learning method, exploit the hidden factors better and improve the accuracy of prediction effectively.

Keywords:  AdaBoost algorithm; drug effect prediction; score prediction; target protein

Year:  2018        PMID: 30583320     DOI: 10.7507/1001-5515.201802026

Source DB:  PubMed          Journal:  Sheng Wu Yi Xue Gong Cheng Xue Za Zhi        ISSN: 1001-5515


  1 in total

1.  Trader as a new optimization algorithm predicts drug-target interactions efficiently.

Authors:  Yosef Masoudi-Sobhanzadeh; Yadollah Omidi; Massoud Amanlou; Ali Masoudi-Nejad
Journal:  Sci Rep       Date:  2019-06-27       Impact factor: 4.379

  1 in total

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