| Literature DB >> 30582054 |
Parimal Dua1, Amit Karmakar1, Chandradipa Ghosh1.
Abstract
Vibrio cholerae is the causative agent of acute dehydrating diarrhoeal disease cholera. Among 71 V. cholerae non-O1/non-O139 isolates, all yielded negative results for ctxA, ctxB and tcpA genes in PCR assay. Few strains were positive for stn (28.38%), and ompU (31.08%) genes. While all isolates were negative for ace gene, only two were positive for zot gene. All strains expressed toxR and toxT genes. It was also found that all isolates were slime-producer and these were capable of forming moderate to high biofilm. Biofilm formation was controlled positively by the transcriptional regulators VpsR and VpsT and was regulated negatively by HapR, as well as CRP regulatory complex. These isolates were resistant to ampicillin, furazolidone, doxycycline, vancomycin, erythromycin, while these were susceptible to ciprofloxacin, gentamycin, kanamycin, polymixin B, norfloxacin, chloramphenicol, sulphamethoxazole-trimethoprim, tetracycline, nalidixic acid, and streptomycin. Indeed, 69.01% isolates were resistant to multiple antibiotics (MAR: resistance to 3 or more antibiotics). Treatment protocols for cholera patients should be based on local antibiogram data.Entities:
Keywords: Infectious disease; Microbiology; Public health
Year: 2018 PMID: 30582054 PMCID: PMC6299121 DOI: 10.1016/j.heliyon.2018.e01040
Source DB: PubMed Journal: Heliyon ISSN: 2405-8440
Details of PCR primers, PCR conditions and amplicon sizes used in this study for the detection of virulence and regulatory genes.
| Target gene | Direction | Primer sequence (5ʹ- 3ʹ) | Amplicon size (bp) | PCR condition | Reference | ||
|---|---|---|---|---|---|---|---|
| Denaturation | Annealing | Extension | |||||
| F | CTC AGA CGG GAT TTG TTA GGC ACG | 301 | 94 °C | 55 °C, | 72 °C | ( | |
| R | TCT ATC TCT GTA GCC CCT ATT ACG | ||||||
| F | GGT TGC TTC TCA TCA TCG AAC CAC | 460 | 94 °C | 58 °C, | 72 °C | ( | |
| R | GAT ACA CAT AAT AGA ATT AAG GAT | ||||||
| F | CAC GAT AAG AAA ACC GGT CAA GAG | 620 | 94 °C | 58 °C, | 72 °C | ( | |
| R | TTA CCA AAT GCA ACG CCG AAT G -3′ | ||||||
| F | CAC GAT AAG AAA ACC GGT CAA GAG | 453 | 94 °C | 55 °C, | 72 °C | ( | |
| R | CGA AAG CAC CTT CTT TCA CAC GTT G | ||||||
| F | GAG AAA CCT ATT CAT TGC | 216 | 94 °C | 54 °C, | 72 °C | ( | |
| R | GCA AGC TGG ATT GCA AC | ||||||
| F | TCG CTT AAC GAT GGC GCG TTT T | 947 | 94 °C | 58 °C, | 72 °C | ( | |
| R | AAC CCC GTT TCA CTT CTA CCC A | ||||||
| F | ACG CTG ACG GAA TCA ACC AAA G | 869 | 94 °C | 55 °C, | 72 °C | ( | |
| R | GCG GAA GTT TGG CTT GAA GTA G | ||||||
| F | TAA GGA TGT GCT TAT GAT GGA CAC CC | 316 | 94 °C | 55 °C, | 72 °C | ( | |
| R | CGT GAT GAA TAA AGA TAC TCA TAG G | ||||||
| F | CCT TCG ATC CCC TAA GCA ATA C | 779 | 94 °C | 58 °C, | 72 °C | ( | |
| R | AGG GTT AGC AAC GAT GCG TAA G | ||||||
| F | TTG CTT GGT TAG TTA TGA GAT | 581 | 94 °C | 56 °C, | 72 °C | ( | |
| R | TTG CAA ACC CAG ACT GAT AT | ||||||
| F | TAGAGCACGGCTTACCGCCA | 649 | 94 °C | 63 °C | 72 °C | This study | |
| R | GCCAGCCAACGGACTTGCTT | ||||||
| F | CGCGGGTGAGAAAGCGGAAA | 286 | 94 °C | 63 °C | 72 °C | This study | |
| R | CACTTGCAGACGACGAGCCA | ||||||
| F | GGTACTATACGCGCCACCAA | 191 | 94 °C | 60 °C | 72 °C | This study | |
| R | GAACCACGCAGCAATCCAAC | ||||||
F, forward; R, Reverse.
Fig. 1Biofilm formation ability of V. cholerae non-O1/non-O139 strains isolated from clinical samples of Paschim Medinipur.
Fig. 2Antibiotic susceptibilities of V. cholerae non-O1/non-O139 strains isolated from clinical sources of Paschim Medinipur; A; Amplicilin, C; Chloramphenicol, E; Erythromycin, K; Kanamycin, Na; Nalidixic acid, PB; Polymixin B, T; Tetracycline, S; Streptomycin, V; Vancomycin, Sxt; Sulphamethoxazole-trimethoprim, D; Doxycycline, F; Furazolidone, Nx; Norfloxacin, Cf; Ciprofloxacin, G; Getamycin.