| Literature DB >> 30582036 |
Sujogya Kumar Panda1, Laxmipriya Padhi1, Gunanidhi Sahoo2.
Abstract
OBJECTIVES: The objective of the present work was to examine the bacterial flora associated with the oral cavity of Indian cobra and to study their antibiogram.Entities:
Keywords: Bioinformatics; Microbiology; Veterinary science; Zoology
Year: 2018 PMID: 30582036 PMCID: PMC6298943 DOI: 10.1016/j.heliyon.2018.e01008
Source DB: PubMed Journal: Heliyon ISSN: 2405-8440
Data sheet regarding collection of Naja naja for oral microflora study.
| Scientific name, English name, Local name | Designation of individuals | Date and place of collection | Temperature during collection | Habitat | Gender |
|---|---|---|---|---|---|
| 21 | 18.02.2010; Kamakhyanagar | 15 °C | School | Male | |
| 24 | 22.02.2010; Bhubaneswar | 22 °C | Rice field | Female | |
| 28 | 24.02.2010; Bhubaneswar | 22 °C | Rice field | Female | |
| 40 | 20.05.2010; Balasore | 35 °C | Kitchen | Male | |
| 59 | 30.05.2010; Baripada | 37 °C | House | Male | |
| 60 | 30.05.2010; Baripada | 37 °C | House | Female |
Fig. 1Eighteen genera of bacteria isolated from oral cavity of Naja naja.
Biochemical characters among Gram-negative rods and bacilli isolated from oral cavity of Naja naja.
| Test No. | 40M1, 60M1 | 28C1, 59C2 | 21C1, 24C1, 28C3, 40C1, 59C1, 60C2 | 21T1, 28T2, 59T2, 60T2 | 60X3, 21X1 | 28X1, 24X1, 60X2, 59X1 | 21X2, 28X2, 40X1, 60X1 | 28E2, 28M1, 59M3 | 21E1, 59E2 | 28N2, 60N1 | 21C2, 28C2, 59M1 | 24M2, 28M2, 40M2, 59M2, 60M2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1. | ||||||||||||
| 2. | − | − | − | − | − | − | ||||||
| 3. | − | − | − | − | − | − | ||||||
| 4. | − | − | − | − | − | − | − | − | ||||
| 5. | − | − | − | − | − | − | − | − | ||||
| 6. | − | − | − | − | − | |||||||
| 7. | − | − | −− | |||||||||
| 8. | − | − | − | − | − | − | − | |||||
| 9. | − | − | − | − | − | − | − | − | − | − | − | |
| 10. | − | − | − | − | − | − | − | − | − | − | ||
| 11. | − | − | − | − | − | − | − | − | − | |||
| 12. | − | − | − | − | − | − | − | − | − | − | − | |
| 13. | − | − | − | − | − | − | − | − | ||||
| 14. | − | − | − | − | − | − | − | − | − | − | ||
| 15. | − | − | − | − | − | − | − | − | − | − | ||
| 16. | − | − | − | − | − | − | − | − | ||||
| 17. | − | − | − | − | − | − | ||||||
| 18. | − | − | − | − | − | − | − | − | ||||
| 19. | − | − | − | − | − | − | − | − | ||||
| 20. | − | − | − | − | − | − | − | |||||
1. Catalase; 2. Oxidase; 3. Indole; 4. Methyl red; 5. Voges Praskuer; 6. Citrate; 7. Utilization of glucose; 8. Utilization of sucrose; 9. Utilization of lactose; 10. Production of gas; 11. H2S production; 12. Arginine; 13. Lysine; 14. Starch; 15. Esculin; 16. Urea; 17. Gelatin; 18. Nitrate; 19. Growth above 42 °C; 20. Growth at 7% NaCl.
Biochemical characters among Gram-positive rods, bacilli and coccus isolated from oral cavity of Naja naja.
| Test | 21N1, 24N2, 28N3, 40N1, 59N1, 60N2 | 24N1, 40E1, 59E3 | 28N1 | 21P1, 24P1, 28P2, 40P1, 59P1, 60P2 | 24E1, 40E2 |
|---|---|---|---|---|---|
| 1. | − | − | |||
| 2. | − | − | − | ||
| 3. | − | − | − | − | |
| 4. | − | − | − | ||
| 5. | − | − | |||
| 6. | − | − | |||
| 7. | − | − | |||
| 8. | − | − | − | ||
| 9. | − | − | − | − | |
| 10. | − | − | − | − | |
| 11. | − | − | − | − | − |
| 12. | − | − | − | ||
| 13. | − | − | − | ||
| 14. | − | − | − | − | |
| 15. | − | − | − | − | |
| 16. | − | − | − | ||
| 17. | − | − | − | − | |
| 18. | − | − | − | ||
| 19. | − | − | − | ||
| 20. | − | − | − | ||
1. Catalase; 2. Oxidase; 3. Indole; 4. Methyl red; 5. Voges Praskuer; 6. Citrate; 7. Utilization of glucose; 8. Utilization of sucrose; 9. Utilization of lactose; 10. Production of gas; 11. H2S production; 12. Arginine; 13. Lysine; 14. Starch; 15. Esculin; 16. Urea; 17. Gelatin; 18. Nitrate; 19. Growth above 42 °C; 20. Growth at 7% NaCl.
Differential sugar fermentation test for isolates from the oral cavity of Naja naja.
| Strain | a | b | c | d | e | f | g | h | i | j | k | l | Species identification |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21C2, 28C2 | + | + | − | − | + | + | − | + | − | − | − | + | |
| 21T1, 28T2, 40T1, 59T2 | + | − | − | + | − | − | + | − | − | + | + | + | |
| 60T2 | + | + | + | − | − | − | + | − | − | + | + | + | |
| 59M1 | + | − | − | − | − | − | − | + | − | − | − | + | |
| 28C1, 59C2 | + | − | − | −/+ | − | − | − | − | − | − | −/+ | − | |
| 28N3, 59N1 | + | − | − | − | − | − | + | − | − | − | + | − | |
| 24N2 | + | − | − | − | − | − | + | − | + | − | + | ND | |
| 21N1, 40N1 | + | − | − | − | ND | ND | − | − | − | − | − | ND | |
| 60X3, 21X1 | + | + | − | + | − | − | + | + | − | − | + | + | |
| 28N2, 60N1 | + | + | − | − | ND | ND | − | − | − | + | + | − | |
| 40E1, 59E2 | + | − | − | + | − | + | − | + | − | − | |||
| 21E1, 59E3 | + | + | − | − | − | − | + | − | − | + | − | + | |
| 59M3, 28E2, 28M1 | + | + | + | − | +/− | + | + | + | − | − | − | − | |
| 24N1 | + | − | − | + | − | + | − | + | + | + | − | ||
| 24M2, 28M2, 28N1, 40M2, 59M2, 60M2 | + | − | − | − | − | + | − | − | − | − | − | − | |
| 24E1, 40E2 | + | − | − | − | − | − | − | − | − | − | − | − | |
| 24C1, 59C1, 60C2 | + | − | − | − | − | − | + | − | − | − | − | − | |
| 21C1 | + | − | − | − | − | + | + | − | − | − | + | + | |
| 40X2, 59X1 | + | − | − | − | − | − | − | + | − | − | − | − | |
| 60X2 | + | − | − | − | − | + | − | + | − | − | − | − | |
| 28X1 | + | − | − | + | − | − | − | + | − | + | − | − | |
| 24X1 | + | − | − | − | − | − | + | − | − | + | + | − | |
| 28C3, 40C1 | + | − | − | − | − | − | + | − | − | − | − | − | |
| 60X1, 21X2 | − | − | − | + | − | − | + | − | − | − | − | − | |
| 24P1 | + | + | − | − | − | − | + | − | − | − | − | − | |
| 28P2, 40P1 | + | + | − | − | − | − | − | − | + | − | − | ND | |
| 28X2, 40X1 | − | − | − | + | − | + | + | − | − | − | + | − | |
| 40M1, 60M1 | + | − | + | + | + | − | + | + | − | + | − | + | |
| 21P1 | + | + | − | + | − | − | + | − | − | − | − | ND | |
| 59P1, 60P2 | + | + | +/− | − | + | − | +/− | − | + | − | − | + | |
| 24N3, 24M1, 28P1, 40T1, 59X2, 59E1, 59M4, 59P2, 60N2, 60C1, 60P1 | −/+ | −/+ | − | −/+ | −/+ | − | −/+ | − | −/+ | − | − | −/+ | Un identified |
a. Glucose; b. Lactose; c. Adonitol; d. Sorbitol; e. Ribose; f. Rhamnose; g. Mannitol; h. Xylose; i. Dextrose; j. Esculin; k. Arabinose; l. Mannose. ND- Not determined
Fig. 2Phylogenetic inference using Neighbor-Joining method in MEGA6. The evolutionary distance was calculated using Kimura 2-parameter method. The sum of branch length of the optimal tree was 0.98420. The bootstrap values were shown above the branches. The analysis involved 41 nucleotide sequences. The bacterial species were isolated from the oral cavity of healthy Indian cobra, Naja naja.
Summary of incidence of different bacterial species isolated from the oral cavity of healthy Indian cobra.
| Phylum | Class | Order | Family | Genus | Species | Number of incidences |
|---|---|---|---|---|---|---|
| Firmicutes | Bacilli | Bacillales | Staphylococcaceae | 4 | ||
| Bacillales | Bacillaceae | 2 | ||||
| Lactobacillales | Enterococcaceae | 3 | ||||
| Proteobacteria | γ- Proteobacteria | Enterobacteriales | Enterobacteriaceae | 3 | ||
| sp. | 5 | |||||
| 2 | ||||||
| 3 | ||||||
| 3 | ||||||
| sp. | 2 | |||||
| sp. | 2 | |||||
| 4 | ||||||
| Aeromonadales | Aeromonadaceae | 4 | ||||
| Pseudomonadales | Pseudomonadaceae | 3 | ||||
| Moraxella ceae | 3 | |||||
| β-Proteo bacteria | Neisseriales | Neisseria ceae | sp. | 2 | ||
| Burkholderiales | Alcaligenaceae | sp. | 2 | |||
| Bacteroidetes | Flavobacteria | Flavobacteriales | Flavobacteriaceae | sp. | 2 | |
| Actinobacteria | Actinobacteridae | Actinomycetales | Micrococcaceae | sp. | 1 |
Fig. 3(a)- Comparison of percentage of occurrence of resistant and sensitive antibiotics among isolates from oral cavity of Naja naja using ICOSA 20-plus. ((b)- Comparison of percentage of occurrence of resistant and sensitive antibiotics among isolates from oral cavity of Naja naja using ICOSA 20-minus.