Literature DB >> 30581133

Allosteric Inhibition of Ubiquitin-like Modifications by a Class of Inhibitor of SUMO-Activating Enzyme.

Yi-Jia Li1, Li Du1, Jianghai Wang1, Ramir Vega1, Terry D Lee2, Yunan Miao2, Grace Aldana-Masangkay1, Eric R Samuels1, Baozong Li1, S Xiaohu Ouyang3, Sharon A Colayco4, Ekaterina V Bobkova4, Daniela B Divlianska4, Eduard Sergienko4, Thomas D Y Chung4, Marwan Fakih5, Yuan Chen6.   

Abstract

Ubiquitin-like (Ubl) post-translational modifications are potential targets for therapeutics. However, the only known mechanism for inhibiting a Ubl-activating enzyme is through targeting its ATP-binding site. Here we identify an allosteric inhibitory site in the small ubiquitin-like modifier (SUMO)-activating enzyme (E1). This site was unexpected because both it and analogous sites are deeply buried in all previously solved structures of E1s of ubiquitin-like modifiers (Ubl). The inhibitor not only suppresses SUMO E1 activity, but also enhances its degradation in vivo, presumably due to a conformational change induced by the compound. In addition, the lead compound increased the expression of miR-34b and reduced c-Myc levels in lymphoma and colorectal cancer cell lines and a colorectal cancer xenograft mouse model. Identification of this first-in-class inhibitor of SUMO E1 is a major advance in modulating Ubl modifications for therapeutic aims.
Copyright © 2018 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  E1; KRas; SUMO; activating enzyme; allosteric inhibitor; c-Myc; cancer; covalent inhibitor; therapeutics; ubiquitin-like modification

Mesh:

Substances:

Year:  2018        PMID: 30581133      PMCID: PMC6524651          DOI: 10.1016/j.chembiol.2018.10.026

Source DB:  PubMed          Journal:  Cell Chem Biol        ISSN: 2451-9448            Impact factor:   8.116


  46 in total

1.  Insights into the ubiquitin transfer cascade from the structure of the activating enzyme for NEDD8.

Authors:  Helen Walden; Michael S Podgorski; Brenda A Schulman
Journal:  Nature       Date:  2003-03-20       Impact factor: 49.962

2.  A mechanism for inhibiting the SUMO pathway.

Authors:  Roberto Boggio; Riccardo Colombo; Ronald T Hay; Giulio F Draetta; Susanna Chiocca
Journal:  Mol Cell       Date:  2004-11-19       Impact factor: 17.970

3.  Structural insights into E1-catalyzed ubiquitin activation and transfer to conjugating enzymes.

Authors:  Imsang Lee; Hermann Schindelin
Journal:  Cell       Date:  2008-07-25       Impact factor: 41.582

Review 4.  Prediction of pharmacokinetic alterations caused by drug-drug interactions: metabolic interaction in the liver.

Authors:  K Ito; T Iwatsubo; S Kanamitsu; K Ueda; H Suzuki; Y Sugiyama
Journal:  Pharmacol Rev       Date:  1998-09       Impact factor: 25.468

5.  Structural basis of Atg8 activation by a homodimeric E1, Atg7.

Authors:  Nobuo N Noda; Kenji Satoo; Yuko Fujioka; Hiroyuki Kumeta; Kenji Ogura; Hitoshi Nakatogawa; Yoshinori Ohsumi; Fuyuhiko Inagaki
Journal:  Mol Cell       Date:  2011-11-04       Impact factor: 17.970

6.  Autophagy suppresses progression of K-ras-induced lung tumors to oncocytomas and maintains lipid homeostasis.

Authors:  Jessie Yanxiang Guo; Gizem Karsli-Uzunbas; Robin Mathew; Seena C Aisner; Jurre J Kamphorst; Anne M Strohecker; Guanghua Chen; Sandy Price; Wenyun Lu; Xin Teng; Eric Snyder; Urmila Santanam; Robert S Dipaola; Tyler Jacks; Joshua D Rabinowitz; Eileen White
Journal:  Genes Dev       Date:  2013-07-01       Impact factor: 11.361

7.  Role of two residues proximal to the active site of Ubc9 in substrate recognition by the Ubc9.SUMO-1 thiolester complex.

Authors:  Michael H Tatham; Yuan Chen; Ronald T Hay
Journal:  Biochemistry       Date:  2003-03-25       Impact factor: 3.162

8.  Conservation in the mechanism of Nedd8 activation by the human AppBp1-Uba3 heterodimer.

Authors:  Richard N Bohnsack; Arthur L Haas
Journal:  J Biol Chem       Date:  2003-05-10       Impact factor: 5.157

9.  Role of SUMO activating enzyme in cancer stem cell maintenance and self-renewal.

Authors:  Li Du; Yi-Jia Li; Marwan Fakih; Rebecca L Wiatrek; Marjun Duldulao; Zhenbin Chen; Peiguo Chu; Julio Garcia-Aguilar; Yuan Chen
Journal:  Nat Commun       Date:  2016-07-28       Impact factor: 14.919

10.  Regulation of miR-34b/c-targeted gene expression program by SUMOylation.

Authors:  Yi-Jia Li; Li Du; Grace Aldana-Masangkay; Xiuli Wang; Ryan Urak; Stephen J Forman; Steven T Rosen; Yuan Chen
Journal:  Nucleic Acids Res       Date:  2018-08-21       Impact factor: 16.971

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  10 in total

1.  Poly-SUMO-2/3 chain modification of Nuf2 facilitates CENP-E kinetochore localization and chromosome congression during mitosis.

Authors:  Divya Subramonian; Te-An Chen; Nicholas Paolini; Xiang-Dong David Zhang
Journal:  Cell Cycle       Date:  2021-04-28       Impact factor: 4.534

2.  Effects of targeting sumoylation processes during latent and induced Epstein-Barr virus infections using the small molecule inhibitor ML-792.

Authors:  Peter Garcia; Abigail Harrod; Shruti Jha; Jessica Jenkins; Alex Barnhill; Holden Lee; Merritt Thompson; Jordan Pringle Williams; James Barefield; Ashton Mckinnon; Persia Suarez; Ananya Shah; Angela J Lowrey; Gretchen L Bentz
Journal:  Antiviral Res       Date:  2021-02-10       Impact factor: 5.970

3.  Targeting SUMOylation dependency in human cancer stem cells through a unique SAE2 motif revealed by chemical genomics.

Authors:  Yannick D Benoit; Ryan R Mitchell; Wenliang Wang; Luca Orlando; Allison L Boyd; Borko Tanasijevic; Lili Aslostovar; Zoya Shapovalova; Meaghan Doyle; Christopher J Bergin; Kinga Vojnits; Fanny L Casado; Justin Di Lu; Deanna P Porras; Juan Luis García-Rodriguez; Jennifer Russell; Aïcha Zouggar; Angelique N Masibag; Cody Caba; Kalinka Koteva; Lakshmana K Kinthada; Jagdish Suresh Patel; Sara N Andres; Jakob Magolan; Tony J Collins; Gerard D Wright; Mickie Bhatia
Journal:  Cell Chem Biol       Date:  2021-05-11       Impact factor: 9.039

Review 4.  The SUMO Pathway in Hematomalignancies and Their Response to Therapies.

Authors:  Mathias Boulanger; Rosa Paolillo; Marc Piechaczyk; Guillaume Bossis
Journal:  Int J Mol Sci       Date:  2019-08-09       Impact factor: 5.923

Review 5.  The design and development of covalent protein-protein interaction inhibitors for cancer treatment.

Authors:  Sha-Sha Cheng; Guan-Jun Yang; Wanhe Wang; Chung-Hang Leung; Dik-Lung Ma
Journal:  J Hematol Oncol       Date:  2020-03-30       Impact factor: 17.388

6.  Targeting integrin αvβ3 with indomethacin inhibits patient-derived xenograft tumour growth and recurrence in oesophageal squamous cell carcinoma.

Authors:  Fangfang Liu; Qiong Wu; Wei Han; Kyle Laster; Yamei Hu; Fayang Ma; Hanyong Chen; Xueli Tian; Yan Qiao; Hui Liu; Dong Joon Kim; Zigang Dong; Kangdong Liu
Journal:  Clin Transl Med       Date:  2021-10

Review 7.  Current Status of SUMOylation Inhibitors.

Authors:  Christopher M Brackett; Brian S J Blagg
Journal:  Curr Med Chem       Date:  2021       Impact factor: 4.530

8.  SUMOylation of E2F1 Regulates Expression of EZH2.

Authors:  Li Du; Marwan G Fakih; Steven T Rosen; Yuan Chen
Journal:  Cancer Res       Date:  2020-08-14       Impact factor: 12.701

9.  Robust high-throughput assays to assess discrete steps in ubiquitination and related cascades.

Authors:  Gabriel Fenteany; Paras Gaur; Gaurav Sharma; Lajos Pintér; Ernő Kiss; Lajos Haracska
Journal:  BMC Mol Cell Biol       Date:  2020-03-30

Review 10.  Novel insights into the impact of the SUMOylation pathway in hematological malignancies (Review).

Authors:  Ling Wang; Jinjun Qian; Ye Yang; Chunyan Gu
Journal:  Int J Oncol       Date:  2021-08-09       Impact factor: 5.650

  10 in total

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