Literature DB >> 30579134

A merged molecular docking, ADME-T and dynamics approaches towards the genus of Arisaema as herpes simplex virus type 1 and type 2 inhibitors.

Kamal Kant1, Uma Ranjan Lal2, Anoop Kumar3, Manik Ghosh4.   

Abstract

An attempt toward screening of phytoconstituents (Arisaema genus) against herpes viruses (HSV-1 and HSV-2) was carried out using in silico approaches. Human HSV-1 and HSV-2 are accountable for cold sores genital herpes, respectively. Two drug targets, namely thymidine kinase (TK; PDB: 2ki5) serine protease (PDB: 1at3) were selected for HSV-1 and HSV-2. Initially, molecular docking tool was employed to screened apex hits phytoconstituents against herpes infections. ADME-T studies of top ranked were also further highlighted to achieve their effectiveness. Following, molecular dynamics studies were also examined to further optimize the stability of ligands. Glide scores and binding interactions of phytoconstituents were compared with Acyclovir, the main drug used in treatment of HSV, the screened top hits exhibited more glide scores and better binding for both HSV-1 and HSV-2 receptors. Additionally, ADME-T showed an ideal range for top hits while molecular dynamics results also illustrated stability of models. Ultimately, the whole efforts reveal to top three most promising hits for HSV-1 (39, 21, 19) and HSV-2 (20, 51, 19) receptors which can be explored further in wet lab experiments as promising agents against HSV infections.
Copyright © 2018 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  ADME-T; Herpes viruses; Molecular docking; Molecular dynamics; Phytoconstituents

Mesh:

Substances:

Year:  2018        PMID: 30579134     DOI: 10.1016/j.compbiolchem.2018.12.005

Source DB:  PubMed          Journal:  Comput Biol Chem        ISSN: 1476-9271            Impact factor:   2.877


  5 in total

1.  Nα-1, 3-Benzenedicarbonyl-Bis-(Amino Acid) and Dipeptide Candidates: Synthesis, Cytotoxic, Antimicrobial and Molecular Docking Investigation.

Authors:  Ahmed M Naglah; Gaber O Moustafa; Ahmed A Elhenawy; Marwa M Mounier; Heba El-Sayed; Mohamed A Al-Omar; Abdulrahman A Almehizia; Mashooq A Bhat
Journal:  Drug Des Devel Ther       Date:  2021-03-25       Impact factor: 4.162

2.  Concatenation of molecular docking and molecular simulation of BACE-1, γ-secretase targeted ligands: in pursuit of Alzheimer's treatment.

Authors:  Nasimudeen R Jabir; Md Tabish Rehman; Khadeejah Alsolami; Shazi Shakil; Torki A Zughaibi; Raed F Alserihi; Mohd Shahnawaz Khan; Mohamed F AlAjmi; Shams Tabrez
Journal:  Ann Med       Date:  2021-12       Impact factor: 4.709

3.  Screening of phytoconstituents of Andrographis paniculata against various targets of Japanese encephalitis virus: An in-silico and in-vitro target-based approach.

Authors:  Shailesh Bhosale; Anoop Kumar
Journal:  Curr Res Pharmacol Drug Discov       Date:  2021-07-31

4.  Antiviral COVID-19 protein and molecular docking: In silico characterization of various antiviral compounds extracted from Arisaema jacquemontii Blume.

Authors:  Sara Shehzadi; Shujaul Mulk Khan; Ghazala Mustafa; Abdullah Abdullah; Ilham Khan; Zeeshan Ahmad; Heesup Han; Jongsik Yu; Junghyun Park; António Raposo
Journal:  Front Public Health       Date:  2022-09-23

5.  Identifying HSV-1 Inhibitors from Natural Compounds via Virtual Screening Targeting Surface Glycoprotein D.

Authors:  Jiadai Wu; Helen Power; Monica Miranda-Saksena; Peter Valtchev; Aaron Schindeler; Anthony L Cunningham; Fariba Dehghani
Journal:  Pharmaceuticals (Basel)       Date:  2022-03-16
  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.