| Literature DB >> 30573921 |
Matti W Leino1,2,3, Svein Ø Solberg4,5, Hanna Maja Tunset6, Jesper Fogelholm2, Else-Marie Karlsson Strese3, Jenny Hagenblad2,6.
Abstract
Multiplying onion (Allium cepa L. Aggregatum-Group), commonly known as shallot or potato onion, has a long tradition of cultivation in Fennoscandian home gardens. During the last decades, more than 80 accessions, maintained as vegetatively propagated clones, have been gathered from home gardens in all Fennoscandian countries. A genetic analysis showed regional patterns of accessions belonging to the same genetic group. However, accessions belonging to the same genetic group could originate in any of the countries. These results suggested both short- and long-distance exchange of set onions, which was confirmed by several survey responses. Some of the most common genetic groups also resembled different modern varieties. The morphological characterization illustrated that most characters were strongly influenced by environment and set onion properties. The only reliably scorable trait was bulb skin color. Neither our morphological nor genetic results support a division between potato onions and shallots. Instead, naming seems to follow linguistic traditions. An ethnobotanical survey tells of the Fennoscandian multiplying onions as being a crop with reliable harvest, excellent storage ability, and good taste. An increased cultivation of this material on both household and commercial scale should be possible.Entities:
Keywords: Aggregating onion; SSRs; on-farm conservation; potato onion; shallot
Year: 2018 PMID: 30573921 PMCID: PMC6267692 DOI: 10.1007/s12231-018-9426-2
Source DB: PubMed Journal: Econ Bot ISSN: 0013-0001 Impact factor: 1.731
groups of accessions used in the study and genetic diversity within groups.
| Group | No. of accessions | Genetic diversity within group (Nei’s |
|---|---|---|
| Denmark, landraces | 24 | 0.48 |
| Finland, landraces | 14 | 0.58 |
| Georgia, landraces | 6 | 0.23 |
| Norway, landraces | 17 | 0.58 |
| Sweden, landraces | 29 | 0.52 |
| Modern varieties | 8 | 0.66 |
| Total | 98 |
markers, primer sequences, and corresponding annealing temperatures.
| Marker | Primer sequence | Primer sequence | Annealing temperature (°C) |
|---|---|---|---|
| AMS02 | GCA TTA ACT ATC TAA AAC ATT G | CCA TCA ACT CAT AAC AGG T | 53 |
| AMS06 | GGT GCA TAG GGT CTC ATC TG | ATT GAT TGT TTG TTT GGA TGT G | 56 |
| AMS08 | GCC ACG ATG TTG AGA TTT CG | CCC GAA TAT CCC ACC AGT TC | 55 |
| AMS12 | AAT GTT GCT TTC TTT AGA TGT TG | TGC AAA ATT ACA AGC AAA CTG | 58 |
| AMS14 | CCC CTG AGT AAA TTC AAA ATC C | TCC TTA GTA TAA TTT CGG GGT AAC | 62 |
| AMS16 | CTG CAT TAA AAC AAC CAA ACT TG | GAG CTC CAC TTC TTC CAA ACT AG | 57 |
| AMS20 | TTG AGC AGC AGA ACC AGA C | ATT CGG ACG CAA CAC ATC | 59 |
| AMS21 | GGT TGT TTC CAC TAC ACT TGA G | CGT CCT TGG TAT TCT TGT GC | 56 |
| AMS22 | CAC CGT TTC CAT AAT CAA GG | ATT TTT TGG GCA TTG TTG G | 58 |
| AMS23 | GCT GTT CAC TGG TCT ATC TGG | ATT CGG TGC TGA TTT TCG | 57 |
| AMS25 | GAG GGC AGT GTT AGC ATT CC | GCA ACC TTT CCC CGA GAG | 61 |
| AMS30 | CAC TAA TGG GGT AAA TAA TGT TCT AC | TTG CCT TGA AAT CCA GAC | 57 |
Fig. 1Examples of morphological variation of Nordic multiplying onions. Note accessions with purple skin color (left) and yellow to brown skin color (right). a NGB17770 from Norway. b SWE104 from Sweden. c NGB8315 from Finland. d NGB16537 from Denmark. e NGB17975 from Norway. f NGB17973 from Finland.
values for pairwise comparisons between countries of origin. average values across loci.
| Georgia | Finland | Sweden | Norway | Denmark | |
|---|---|---|---|---|---|
| Finland | 0.247*** | ||||
| Sweden | 0.246*** | 0.115*** | |||
| Norway | 0.274*** | 0.110*** | 0.019 | ||
| Denmark | 0.292*** | 0.135*** | 0.008 | 0.023 | |
| Modern varieties | 0.267*** | 0.032 | 0.082*** | 0.084*** | 0.109*** |
***Significant at P = 0.001
Fig. 2Principal component analyses (PCA) of SSR genotyping of multiplying onions. a All accessions, marked by country of origin. b All Nordic accessions, marked by country of origin. c All Nordic accessions, marked by bulb skin color. d All Nordic accessions, marked by name. In a, PC1 explains 20.14% of the variation and PC2 10.65%; in b–d, PC1 explains 23.67% of the variation and PC2 12.83%.
Fig. 3Geographical visualization of DAPC clustering of Nordic multiplying onions. Pie charts show the proportion of designation to each of N clusters. Finnish accessions with unknown location of origin are shown in a separate block.
Summarized information from the ethnobotanical survey.
| Trait | Number of responses | Comments |
|---|---|---|
| Donor taxon name | ||
| Shallots (S) | 16 | Denmark and Norway: all S, Sweden: 6/14 = S |
| Potato onion (P) | 5 | Denmark and Norway: no P, Sweden: 5/14 = P |
| Other names | 3 | All three in Sweden |
| No answer | 2 | |
| Size of set onion | ||
| Small | 11 | |
| Large | 1 | |
| Other criteria | 9 | Medium-sized mentioned by five of the nine respondents |
| No answer | 5 | |
| Flowering | ||
| No | 12 | |
| Yes, sometimes | 8 | Neither of the respondents have used the seeds for seeding |
| No answer | 6 | |
| Keeping ability | ||
| Until spring | 7 | |
| Approx. 1 year | 6 | |
| More than 1 year | 4 | |
| No answer | 7 | |