Literature DB >> 30571913

Stationary Patterns in a Two-Protein Reaction-Diffusion System.

Philipp Glock1, Beatrice Ramm1, Tamara Heermann1, Simon Kretschmer1, Jakob Schweizer1, Jonas Mücksch1, Gökberk Alagöz1, Petra Schwille1.   

Abstract

Patterns formed by reaction-diffusion mechanisms are crucial for the development or sustenance of most organisms in nature. Patterns include dynamic waves, but are more often found as static distributions, such as animal skin patterns. Yet, a simplistic biological model system to reproduce and quantitatively investigate static reaction-diffusion patterns has been missing so far. Here, we demonstrate that the Escherichia coli Min system, known for its oscillatory behavior between the cell poles, is under certain conditions capable of transitioning to quasi-stationary protein distributions on membranes closely resembling Turing patterns. We systematically titrated both proteins, MinD and MinE, and found that removing all purification tags and linkers from the N-terminus of MinE was critical for static patterns to occur. At small bulk heights, dynamic patterns dominate, such as in rod-shaped microcompartments. We see implications of this work for studying pattern formation in general, but also for creating artificial gradients as downstream cues in synthetic biology applications.

Entities:  

Keywords:  in vitro reconstitution; min proteins; pattern formation; reaction-diffusion system; self-organization; stationary pattern

Mesh:

Substances:

Year:  2019        PMID: 30571913     DOI: 10.1021/acssynbio.8b00415

Source DB:  PubMed          Journal:  ACS Synth Biol        ISSN: 2161-5063            Impact factor:   5.110


  10 in total

1.  Mode selection mechanism in traveling and standing waves revealed by Min wave reconstituted in artificial cells.

Authors:  Sakura Takada; Natsuhiko Yoshinaga; Nobuhide Doi; Kei Fujiwara
Journal:  Sci Adv       Date:  2022-06-08       Impact factor: 14.957

2.  Bulk-surface coupling identifies the mechanistic connection between Min-protein patterns in vivo and in vitro.

Authors:  Fridtjof Brauns; Grzegorz Pawlik; Jacob Halatek; Jacob Kerssemakers; Erwin Frey; Cees Dekker
Journal:  Nat Commun       Date:  2021-06-03       Impact factor: 14.919

3.  Increasing MinD's Membrane Affinity Yields Standing Wave Oscillations and Functional Gradients on Flat Membranes.

Authors:  Simon Kretschmer; Tamara Heermann; Andrea Tassinari; Philipp Glock; Petra Schwille
Journal:  ACS Synth Biol       Date:  2021-04-21       Impact factor: 5.110

4.  Flow Induced Symmetry Breaking in a Conceptual Polarity Model.

Authors:  Manon C Wigbers; Fridtjof Brauns; Ching Yee Leung; Erwin Frey
Journal:  Cells       Date:  2020-06-23       Impact factor: 6.600

5.  A non-linear analysis of Turing pattern formation.

Authors:  Yanyan Chen; Javier Buceta
Journal:  PLoS One       Date:  2019-08-09       Impact factor: 3.240

Review 6.  The E. coli MinCDE system in the regulation of protein patterns and gradients.

Authors:  Beatrice Ramm; Tamara Heermann; Petra Schwille
Journal:  Cell Mol Life Sci       Date:  2019-07-17       Impact factor: 9.261

7.  Design of biochemical pattern forming systems from minimal motifs.

Authors:  Philipp Glock; Fridtjof Brauns; Jacob Halatek; Erwin Frey; Petra Schwille
Journal:  Elife       Date:  2019-11-26       Impact factor: 8.140

8.  Building a community to engineer synthetic cells and organelles from the bottom-up.

Authors:  Oskar Staufer; Jacqueline A De Lora; Eleonora Bailoni; Alisina Bazrafshan; Amelie S Benk; Kevin Jahnke; Zachary A Manzer; Lado Otrin; Telmo Díez Pérez; Judee Sharon; Jan Steinkühler; Katarzyna P Adamala; Bruna Jacobson; Marileen Dogterom; Kerstin Göpfrich; Darko Stefanovic; Susan R Atlas; Michael Grunze; Matthew R Lakin; Andrew P Shreve; Joachim P Spatz; Gabriel P López
Journal:  Elife       Date:  2021-12-20       Impact factor: 8.140

9.  Bridging scales in a multiscale pattern-forming system.

Authors:  Laeschkir Würthner; Fridtjof Brauns; Grzegorz Pawlik; Jacob Halatek; Jacob Kerssemakers; Cees Dekker; Erwin Frey
Journal:  Proc Natl Acad Sci U S A       Date:  2022-08-12       Impact factor: 12.779

10.  In vitro assembly, positioning and contraction of a division ring in minimal cells.

Authors:  Shunshi Kohyama; Adrián Merino-Salomón; Petra Schwille
Journal:  Nat Commun       Date:  2022-10-15       Impact factor: 17.694

  10 in total

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