Literature DB >> 30565861

Dynamic, Bioresponsive Hydrogels via Changes in DNA Aptamer Conformation.

Se Won Bae1, Jae Sung Lee1, Victoria M Harms1, William L Murphy1,2,3.   

Abstract

DNA aptamers are integrated into synthetic hydrogel networks with the aim of creating hydrogels that undergo volume changes when exposed to target molecules. Specifically, single-stranded DNA aptamers in cDNA-bound, extended state are incorporated into hydrogel networks as cross-links, so that the nanoscale conformational change of DNA aptamers upon binding to target molecules will induce macroscopic volume decreases of hydrogels. Hydrogels incorporating adenosine triphosphate (ATP)-binding aptamers undergo controllable volume decreases of up to 40.3 ± 4.6% when exposed to ATP, depending on the concentration of DNA aptamers incorporated in the hydrogel network, temperature, and target molecule concentration. Importantly, this approach can be generalized to aptamer sequences with distinct binding targets, as demonstrated here that hydrogels incorporating an insulin-binding aptamer undergo volume changes in response to soluble insulin. This work provides an example of bioinspired hydrogels that undergo macroscopic volume changes that stem from conformational shifts in resident DNA-based cross-links.
© 2018 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  DNA; aptamers; biomedical applications; hydrogels; molecular recognition

Mesh:

Substances:

Year:  2018        PMID: 30565861      PMCID: PMC9533696          DOI: 10.1002/mabi.201800353

Source DB:  PubMed          Journal:  Macromol Biosci        ISSN: 1616-5187            Impact factor:   5.859


  31 in total

1.  Selection in vitro of single-stranded DNA molecules that fold into specific ligand-binding structures.

Authors:  A D Ellington; J W Szostak
Journal:  Nature       Date:  1992-02-27       Impact factor: 49.962

2.  DNA-responsive hydrogels that can shrink or swell.

Authors:  Yoshihiko Murakami; Mizuo Maeda
Journal:  Biomacromolecules       Date:  2005 Nov-Dec       Impact factor: 6.988

3.  Development of a Dual-Functional Hydrogel Using RGD and Anti-VEGF Aptamer.

Authors:  Nan Zhao; Mark R Battig; Ming Xu; Xiuli Wang; Na Xiong; Yong Wang
Journal:  Macromol Biosci       Date:  2017-08-15       Impact factor: 4.979

4.  Macromolecular amplification of binding response in superaptamer hydrogels.

Authors:  Wei Bai; Nicholas A Gariano; David A Spivak
Journal:  J Am Chem Soc       Date:  2013-04-30       Impact factor: 15.419

5.  Affinity analysis of DNA aptamer-peptide interactions using gold nanoparticles.

Authors:  Lihan Tan; Koon Gee Neoh; En-Tang Kang; Woo-Seok Choe; Xiaodi Su
Journal:  Anal Biochem       Date:  2011-12-09       Impact factor: 3.365

6.  A DNA aptamer that binds adenosine and ATP.

Authors:  D E Huizenga; J W Szostak
Journal:  Biochemistry       Date:  1995-01-17       Impact factor: 3.162

7.  Insulin capture by an insulin-linked polymorphic region G-quadruplex DNA oligonucleotide.

Authors:  Adam C Connor; Kimberley A Frederick; Elizabeth J Morgan; Linda B McGown
Journal:  J Am Chem Soc       Date:  2006-04-19       Impact factor: 15.419

8.  Fluorescent-labeled single-strand ATP aptamer DNA: chemo- and enantio-selectivity in sensing adenosine.

Authors:  Hidehito Urata; Kanba Nomura; Shun-ichi Wada; Masao Akagi
Journal:  Biochem Biophys Res Commun       Date:  2007-06-19       Impact factor: 3.575

9.  Ortho-Stabilized (18) F-Azido Click Agents and their Application in PET Imaging with Single-Stranded DNA Aptamers.

Authors:  Lu Wang; Orit Jacobson; Din Avdic; Benjamin H Rotstein; Ido D Weiss; Lee Collier; Xiaoyuan Chen; Neil Vasdev; Steven H Liang
Journal:  Angew Chem Int Ed Engl       Date:  2015-08-20       Impact factor: 15.336

10.  Injectable and bioresponsive hydrogels for on-demand matrix metalloproteinase inhibition.

Authors:  Brendan P Purcell; David Lobb; Manoj B Charati; Shauna M Dorsey; Ryan J Wade; Kia N Zellars; Heather Doviak; Sara Pettaway; Christina B Logdon; James A Shuman; Parker D Freels; Joseph H Gorman; Robert C Gorman; Francis G Spinale; Jason A Burdick
Journal:  Nat Mater       Date:  2014-03-30       Impact factor: 43.841

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  2 in total

1.  Linkage Groups within Thiol-Ene Photoclickable PEG Hydrogels Control In Vivo Stability.

Authors:  Michael D Hunckler; Juan D Medina; Maria M Coronel; Jessica D Weaver; Cherie L Stabler; Andrés J García
Journal:  Adv Healthc Mater       Date:  2019-05-21       Impact factor: 9.933

Review 2.  Aptamer-functionalized hydrogels: An emerging class of biomaterials for protein delivery, cell capture, regenerative medicine, and molecular biosensing.

Authors:  Lidya Abune; Brandon Davis; Yong Wang
Journal:  Wiley Interdiscip Rev Nanomed Nanobiotechnol       Date:  2021-06-15
  2 in total

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