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Literature DB >> 30560489

The First Molecular Detection of Aichi Virus 1 in Raw Sewage and Mussels Collected in South Africa.

Oikwathaile Onosi¹, Nicole S Upfold², Michael D Jukes¹, Garry A Luke³, Caroline Knox¹.

Abstract

Aichi virus 1 (AiV-1) has a worldwide distribution and is associated with gastroenteritis in humans. In this study, raw sewage and mussel samples were analyzed for the presence of AiV-1 using reverse transcription-PCR (RT-PCR). Amplification and sequencing of the 3CD and VP1 genomic regions followed by phylogenetic analysis using selected genome sequences revealed the presence of AiV-1, genotype B. The results highlight the importance of further screening to evaluate the prevalence and epidemiology of this clinically important virus in South Africa.

Entities: Disease Species

Keywords: Aichi virus 1; Kobuvirus; Mussels; Picornaviridae; Waste water

Mesh：

Substances：
Sewage

Year: 2018 PMID： 30560489 DOI： 10.1007/s12560-018-9362-4

Source DB: PubMed Journal: Food Environ Virol ISSN： 1867-0334 Impact factor: 2.778

37 in total

1. Temporal Association of Rotavirus Vaccine Introduction and Reduction in All-Cause Childhood Diarrheal Hospitalizations in South Africa.

Authors: Michelle J Groome; Elizabeth R Zell; Fatima Solomon; Susan Nzenze; Umesh D Parashar; Alane Izu; Shabir A Madhi
Journal: Clin Infect Dis Date: 2016-05-01 Impact factor: 9.079

2. Letter: Rotavirus as a cause of gastro-enteritis in Black South African infants.

Authors: B D Schoub; J D Nel; G Lecatsas; A S Greeff; O W Prozesky; I T Hay; J G Prinsloo
Journal: S Afr Med J Date: 1976-07-10

Review 3. Kobuviruses - a comprehensive review.

Authors: Gábor Reuter; Akos Boros; Péter Pankovics
Journal: Rev Med Virol Date: 2011-01 Impact factor: 6.989

4. Application of a reverse transcription-PCR for identification and differentiation of Aichi virus, a new member of the Picornavirus family associated with gastroenteritis in humans.

Authors: T Yamashita; M Sugiyama; H Tsuzuki; K Sakae; Y Suzuki; Y Miyazaki
Journal: J Clin Microbiol Date: 2000-08 Impact factor: 5.948

5. Acute infantile gastroenteritis associated with human enteric viruses in Tunisia.

Authors: Khira Sdiri-Loulizi; Hakima Gharbi-Khélifi; Alexis de Rougemont; Slaheddine Chouchane; Nabil Sakly; Katia Ambert-Balay; Mouna Hassine; Mohamed Neji Guédiche; Mahjoub Aouni; Pierre Pothier
Journal: J Clin Microbiol Date: 2008-02-20 Impact factor: 5.948

6. Molecular detection and characterization of Aichivirus A in adult patients with diarrhea in Thailand.

Authors: Wilaiporn Saikruang; Pattara Khamrin; Boonpa Suantai; Hiroshi Ushijima; Niwat Maneekarn
Journal: J Med Virol Date: 2014-02-17 Impact factor: 2.327

7. Prevalence and genetic diversity of Aichi virus strains in stool samples from community and hospitalized patients.

Authors: K Ambert-Balay; M Lorrot; F Bon; H Giraudon; J Kaplon; M Wolfer; P Lebon; D Gendrel; P Pothier
Journal: J Clin Microbiol Date: 2008-02-06 Impact factor: 5.948

8. Human bocavirus, coronavirus, and polyomavirus detected among patients hospitalised with severe acute respiratory illness in South Africa, 2012 to 2013.

Authors: Kathleen Subramoney; Orienka Hellferscee; Marthi Pretorius; Stefano Tempia; Meredith McMorrow; Anne von Gottberg; Nicole Wolter; Ebrahim Variava; Halima Dawood; Kathleen Kahn; Sibongile Walaza; Shabir A Madhi; Cheryl Cohen; Marietjie Venter; Florette K Treurnicht
Journal: Health Sci Rep Date: 2018-07-18

The First Molecular Detection of Aichi Virus 1 in Raw Sewage and Mussels Collected in South Africa.

1. Temporal Association of Rotavirus Vaccine Introduction and Reduction in All-Cause Childhood Diarrheal Hospitalizations in South Africa.

2. Letter: Rotavirus as a cause of gastro-enteritis in Black South African infants.

Review 3. Kobuviruses - a comprehensive review.

4. Application of a reverse transcription-PCR for identification and differentiation of Aichi virus, a new member of the Picornavirus family associated with gastroenteritis in humans.

5. Acute infantile gastroenteritis associated with human enteric viruses in Tunisia.

6. Molecular detection and characterization of Aichivirus A in adult patients with diarrhea in Thailand.

7. Prevalence and genetic diversity of Aichi virus strains in stool samples from community and hospitalized patients.

8. Human bocavirus, coronavirus, and polyomavirus detected among patients hospitalised with severe acute respiratory illness in South Africa, 2012 to 2013.

9. Enteric virome of Ethiopian children participating in a clean water intervention trial.

10. Aichi virus strains in children with gastroenteritis, China.

1. The First Detection of Human Bocavirus Species 2 and 3 in Raw Sewage and Mussels in South Africa.

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Review 4. Occurrence of various viruses and recent evidence of SARS-CoV-2 in wastewater systems.

5. Epidemiological Evidence for Fecal-Oral Transmission of Murine Kobuvirus.

Review 6. Global public health implications of human exposure to viral contaminated water.