Literature DB >> 30550789

Protein Interaction Mapping Identifies RBBP6 as a Negative Regulator of Ebola Virus Replication.

Jyoti Batra1, Judd F Hultquist2, Dandan Liu3, Olena Shtanko4, John Von Dollen5, Laura Satkamp5, Gwendolyn M Jang5, Priya Luthra6, Toni M Schwarz7, Gabriel I Small3, Eusondia Arnett8, Manu Anantpadma4, Ann Reyes4, Daisy W Leung3, Robyn Kaake5, Paige Haas5, Carson B Schmidt5, Larry S Schlesinger8, Douglas J LaCount9, Robert A Davey4, Gaya K Amarasinghe3, Christopher F Basler10, Nevan J Krogan11.   

Abstract

Ebola virus (EBOV) infection often results in fatal illness in humans, yet little is known about how EBOV usurps host pathways during infection. To address this, we used affinity tag-purification mass spectrometry (AP-MS) to generate an EBOV-host protein-protein interaction (PPI) map. We uncovered 194 high-confidence EBOV-human PPIs, including one between the viral transcription regulator VP30 and the host ubiquitin ligase RBBP6. Domain mapping identified a 23 amino acid region within RBBP6 that binds to VP30. A crystal structure of the VP30-RBBP6 peptide complex revealed that RBBP6 mimics the viral nucleoprotein (NP) binding to the same interface of VP30. Knockdown of endogenous RBBP6 stimulated viral transcription and increased EBOV replication, whereas overexpression of either RBBP6 or the peptide strongly inhibited both. These results demonstrate the therapeutic potential of biologics that target this interface and identify additional PPIs that may be leveraged for novel therapeutic strategies.
Copyright © 2018 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Ebola virus; RBBP6; RNA viruses; VP30; antiviral factor; host-pathogen interactions; protein-protein interactions; virus-host interactions

Mesh:

Substances:

Year:  2018        PMID: 30550789      PMCID: PMC6366944          DOI: 10.1016/j.cell.2018.08.044

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   66.850


  65 in total

1.  The Ebola virus VP35 protein functions as a type I IFN antagonist.

Authors:  C F Basler; X Wang; E Mühlberger; V Volchkov; J Paragas; H D Klenk; A García-Sastre; P Palese
Journal:  Proc Natl Acad Sci U S A       Date:  2000-10-24       Impact factor: 11.205

2.  Ebola virus VP24 proteins inhibit the interaction of NPI-1 subfamily karyopherin alpha proteins with activated STAT1.

Authors:  St Patrick Reid; Charalampos Valmas; Osvaldo Martinez; Freddy Mauricio Sanchez; Christopher F Basler
Journal:  J Virol       Date:  2007-10-10       Impact factor: 5.103

3.  RNA Binding of Ebola Virus VP30 Is Essential for Activating Viral Transcription.

Authors:  Nadine Biedenkopf; Julia Schlereth; Arnold Grünweller; Stephan Becker; Roland K Hartmann
Journal:  J Virol       Date:  2016-07-27       Impact factor: 5.103

4.  The RNA Exosome Syncs IAV-RNAPII Transcription to Promote Viral Ribogenesis and Infectivity.

Authors:  Alexander Rialdi; Judd Hultquist; David Jimenez-Morales; Zuleyma Peralta; Laura Campisi; Romain Fenouil; Natasha Moshkina; Zhen Zhen Wang; Brice Laffleur; Robyn M Kaake; Michael J McGregor; Kelsey Haas; Evangelos Pefanis; Randy A Albrecht; Lars Pache; Sumit Chanda; Joanna Jen; Jordi Ochando; Minji Byun; Uttiya Basu; Adolfo García-Sastre; Nevan Krogan; Harm van Bakel; Ivan Marazzi
Journal:  Cell       Date:  2017-05-04       Impact factor: 41.582

5.  Ebola virus entry requires the host-programmed recognition of an intracellular receptor.

Authors:  Emily Happy Miller; Gregor Obernosterer; Matthijs Raaben; Andrew S Herbert; Maika S Deffieu; Anuja Krishnan; Esther Ndungo; Rohini G Sandesara; Jan E Carette; Ana I Kuehne; Gordon Ruthel; Suzanne R Pfeffer; John M Dye; Sean P Whelan; Thijn R Brummelkamp; Kartik Chandran
Journal:  EMBO J       Date:  2012-03-06       Impact factor: 11.598

6.  Vif hijacks CBF-β to degrade APOBEC3G and promote HIV-1 infection.

Authors:  Stefanie Jäger; Dong Young Kim; Judd F Hultquist; Keisuke Shindo; Rebecca S LaRue; Eunju Kwon; Ming Li; Brett D Anderson; Linda Yen; David Stanley; Cathal Mahon; Joshua Kane; Kathy Franks-Skiba; Peter Cimermancic; Alma Burlingame; Andrej Sali; Charles S Craik; Reuben S Harris; John D Gross; Nevan J Krogan
Journal:  Nature       Date:  2011-12-21       Impact factor: 49.962

7.  Global Mapping of the Inc-Human Interactome Reveals that Retromer Restricts Chlamydia Infection.

Authors:  Kathleen M Mirrashidi; Cherilyn A Elwell; Erik Verschueren; Jeffrey R Johnson; Andrew Frando; John Von Dollen; Oren Rosenberg; Natali Gulbahce; Gwendolyn Jang; Tasha Johnson; Stefanie Jäger; Anusha M Gopalakrishnan; Jessica Sherry; Joe Dan Dunn; Andrew Olive; Bennett Penn; Michael Shales; Jeffery S Cox; Michael N Starnbach; Isabelle Derre; Raphael Valdivia; Nevan J Krogan; Joanne Engel
Journal:  Cell Host Microbe       Date:  2015-06-25       Impact factor: 21.023

8.  Influenza virus-host interactome screen as a platform for antiviral drug development.

Authors:  Tokiko Watanabe; Eiryo Kawakami; Jason E Shoemaker; Tiago J S Lopes; Yukiko Matsuoka; Yuriko Tomita; Hiroko Kozuka-Hata; Takeo Gorai; Tomoko Kuwahara; Eiji Takeda; Atsushi Nagata; Ryo Takano; Maki Kiso; Makoto Yamashita; Yuko Sakai-Tagawa; Hiroaki Katsura; Naoki Nonaka; Hiroko Fujii; Ken Fujii; Yukihiko Sugita; Takeshi Noda; Hideo Goto; Satoshi Fukuyama; Shinji Watanabe; Gabriele Neumann; Masaaki Oyama; Hiroaki Kitano; Yoshihiro Kawaoka
Journal:  Cell Host Microbe       Date:  2014-11-20       Impact factor: 21.023

9.  Electron Cryo-microscopy Structure of Ebola Virus Nucleoprotein Reveals a Mechanism for Nucleocapsid-like Assembly.

Authors:  Zhaoming Su; Chao Wu; Liuqing Shi; Priya Luthra; Grigore D Pintilie; Britney Johnson; Justin R Porter; Peng Ge; Muyuan Chen; Gai Liu; Thomas E Frederick; Jennifer M Binning; Gregory R Bowman; Z Hong Zhou; Christopher F Basler; Michael L Gross; Daisy W Leung; Wah Chiu; Gaya K Amarasinghe
Journal:  Cell       Date:  2018-02-22       Impact factor: 41.582

10.  Taxonomy of the order Mononegavirales: update 2016.

Authors:  Claudio L Afonso; Gaya K Amarasinghe; Krisztián Bányai; Yīmíng Bào; Christopher F Basler; Sina Bavari; Nicolás Bejerman; Kim R Blasdell; François-Xavier Briand; Thomas Briese; Alexander Bukreyev; Charles H Calisher; Kartik Chandran; Jiāsēn Chéng; Anna N Clawson; Peter L Collins; Ralf G Dietzgen; Olga Dolnik; Leslie L Domier; Ralf Dürrwald; John M Dye; Andrew J Easton; Hideki Ebihara; Szilvia L Farkas; Juliana Freitas-Astúa; Pierre Formenty; Ron A M Fouchier; Yànpíng Fù; Elodie Ghedin; Michael M Goodin; Roger Hewson; Masayuki Horie; Timothy H Hyndman; Dàohóng Jiāng; Elliot W Kitajima; Gary P Kobinger; Hideki Kondo; Gael Kurath; Robert A Lamb; Sergio Lenardon; Eric M Leroy; Ci-Xiu Li; Xian-Dan Lin; Lìjiāng Liú; Ben Longdon; Szilvia Marton; Andrea Maisner; Elke Mühlberger; Sergey V Netesov; Norbert Nowotny; Jean L Patterson; Susan L Payne; Janusz T Paweska; Rick E Randall; Bertus K Rima; Paul Rota; Dennis Rubbenstroth; Martin Schwemmle; Mang Shi; Sophie J Smither; Mark D Stenglein; David M Stone; Ayato Takada; Calogero Terregino; Robert B Tesh; Jun-Hua Tian; Keizo Tomonaga; Noël Tordo; Jonathan S Towner; Nikos Vasilakis; Martin Verbeek; Viktor E Volchkov; Victoria Wahl-Jensen; John A Walsh; Peter J Walker; David Wang; Lin-Fa Wang; Thierry Wetzel; Anna E Whitfield; Ji Tāo Xiè; Kwok-Yung Yuen; Yong-Zhen Zhang; Jens H Kuhn
Journal:  Arch Virol       Date:  2016-05-23       Impact factor: 2.574

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  48 in total

1.  ARIH2 Is a Vif-Dependent Regulator of CUL5-Mediated APOBEC3G Degradation in HIV Infection.

Authors:  Ruth Hüttenhain; Jiewei Xu; Lily A Burton; David E Gordon; Judd F Hultquist; Jeffrey R Johnson; Laura Satkamp; Joseph Hiatt; David Y Rhee; Kheewoong Baek; David C Crosby; Alan D Frankel; Alexander Marson; J Wade Harper; Arno F Alpi; Brenda A Schulman; John D Gross; Nevan J Krogan
Journal:  Cell Host Microbe       Date:  2019-06-25       Impact factor: 21.023

Review 2.  Current status of small molecule drug development for Ebola virus and other filoviruses.

Authors:  Megan R Edwards; Christopher F Basler
Journal:  Curr Opin Virol       Date:  2019-04-16       Impact factor: 7.090

3.  Dabie bandavirus Nonstructural Protein Interacts with Actin to Induce F-Actin Rearrangement and Inhibit Viral Adsorption and Entry.

Authors:  Hongyun Liu; Sihua Liu; Zixiang Liu; Xiaoning Gao; Leling Xu; Mengqian Huang; Yazhi Su; Zhiyun Wang; Tao Wang
Journal:  J Virol       Date:  2022-07-11       Impact factor: 6.549

Review 4.  A systems approach to infectious disease.

Authors:  Manon Eckhardt; Judd F Hultquist; Robyn M Kaake; Ruth Hüttenhain; Nevan J Krogan
Journal:  Nat Rev Genet       Date:  2020-02-14       Impact factor: 53.242

5.  A Quantitative Genetic Interaction Map of HIV Infection.

Authors:  David E Gordon; Ariane Watson; Assen Roguev; Simin Zheng; Gwendolyn M Jang; Joshua Kane; Jiewei Xu; Jeffrey Z Guo; Erica Stevenson; Danielle L Swaney; Kathy Franks-Skiba; Erik Verschueren; Michael Shales; David C Crosby; Alan D Frankel; Alexander Marson; Ivan Marazzi; Gerard Cagney; Nevan J Krogan
Journal:  Mol Cell       Date:  2020-02-20       Impact factor: 17.970

6.  Proteomics in Non-model Organisms: A New Analytical Frontier.

Authors:  Michelle Heck; Benjamin A Neely
Journal:  J Proteome Res       Date:  2020-08-20       Impact factor: 4.466

Review 7.  Distinct Genome Replication and Transcription Strategies within the Growing Filovirus Family.

Authors:  Adam J Hume; Elke Mühlberger
Journal:  J Mol Biol       Date:  2019-06-29       Impact factor: 5.469

Review 8.  Therapeutic strategies to target the Ebola virus life cycle.

Authors:  Thomas Hoenen; Allison Groseth; Heinz Feldmann
Journal:  Nat Rev Microbiol       Date:  2019-07-24       Impact factor: 60.633

9.  Metabolic reprogramming and epigenetic changes of vital organs in SARS-CoV-2-induced systemic toxicity.

Authors:  Shen Li; Feiyang Ma; Tomohiro Yokota; Gustavo Garcia; Amelia Palermo; Yijie Wang; Colin Farrell; Yu-Chen Wang; Rimao Wu; Zhiqiang Zhou; Calvin Pan; Marco Morselli; Michael A Teitell; Sergey Ryazantsev; Gregory A Fishbein; Johanna Ten Hoeve; Valerie A Arboleda; Joshua Bloom; Barbara Dillon; Matteo Pellegrini; Aldons J Lusis; Thomas G Graeber; Vaithilingaraja Arumugaswami; Arjun Deb
Journal:  JCI Insight       Date:  2021-01-25

10.  Non-canonical proline-tyrosine interactions with multiple host proteins regulate Ebola virus infection.

Authors:  Jyoti Batra; Hiroyuki Mori; Gabriel I Small; Manu Anantpadma; Olena Shtanko; Nawneet Mishra; Mengru Zhang; Dandan Liu; Caroline G Williams; Nadine Biedenkopf; Stephan Becker; Michael L Gross; Daisy W Leung; Robert A Davey; Gaya K Amarasinghe; Nevan J Krogan; Christopher F Basler
Journal:  EMBO J       Date:  2021-08-02       Impact factor: 14.012

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