| Literature DB >> 30543426 |
Torben Heise1, Johan F A Pijnenborg1, Christian Büll2, Niek van Hilten3, Esther D Kers-Rebel2, Natasja Balneger2, Hidde Elferink1, Gosse J Adema2, Thomas J Boltje1.
Abstract
Sialic acid sugars on mammalian cells regulate numerous biological processes, while aberrant expression of sialic acid is associated with diseases such as cancer and pathogenic infection. Inhibition of the sialic acid biosynthesis may therefore hold considerable therapeutic potential. To effectively decrease the sialic acid expression, we synthesized C-5-modified 3-fluoro sialic acid sialyltransferase inhibitors. We found that C-5 carbamates significantly enhanced and prolonged the inhibitory activity in multiple mouse and human cell lines. As an underlying mechanism, we have identified that carbamate-modified 3-fluoro sialic acid inhibitors are more efficiently metabolized to their active cytidine monophosphate analogues, reaching higher effective inhibitor concentrations inside cells.Entities:
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Year: 2018 PMID: 30543426 PMCID: PMC6348442 DOI: 10.1021/acs.jmedchem.8b01757
Source DB: PubMed Journal: J Med Chem ISSN: 0022-2623 Impact factor: 7.446
Figure 1(a) Working model of metabolic ST inhibitors. The acetylated sialic acid derivative is taken up via passive diffusion and deacetylated by intracellular esterases. CMP activation in the nucleus by CMAS produces the active inhibitor CMP–SiaFAc, which competitively blocks STs and induces feedback inhibition of de novo sialic acid biosynthesis. (b) Structure of C-3-fluorinated ST inhibitors 1–18 with C-5 amide or carbamate modifications.
Scheme 1Synthesis of C-5-Modified ST Inhibitors
(i) Br2, DCM, r.t., 2.5 h; (ii) TEA, DCM, r.t., 16 h, 78% (over two steps); (iii) Selectfluor, 1:3 H2O/DMF, 60 °C, 3 h, 72% (based on recovery); (iv) Ac2O, py, r.t., 48 h, 95%; (v) TFA, DCM, H2O, r.t., 2 h; (vi) activated acyl substituents (A), TEA, DCM, r.t.; 2: Side product in a reaction of 12 → 11 90%; 3: A = chloroacetyl chloride, 16 h, 60%; 4: A = acetoxyacetyl chloride, 16 h, 43%; 5: A = azidoacetic acid N-hydroxysuccinimide (NHS) ester, 23 h, 16%; 6: A = 4-pentynoic acid NHS ester, 16 h, 7%; 7: A = N-propargyloxycarbonyl-succinimide, 15 h, 40%; 8: A = allyl chloroformate, 21.5 h, 16%; 9: A = methyl chloroformate, 16 h, 33%; 10: A = ethyl chloroformate, 16 h, 16%; 11: A = isobutyl chloroformate, 16 h, 33%; 13: A = benzyl chloroformate, 21.5 h, 6%; 15: A = n-butyl chloroformate, 16 h, 32%; 16: A = 2-methoxymethyl chloroformate, 16 h, 90%; 17: A = 2,2,2-trichloroethoxycarbonyl chloroformate, 16 h, 17%; 18: A = 2-fluoroethyl chloroformate, 16 h, 60%; and (vii) 14: benzyl azide, TBTA, CuI, Cu, DMF, H2O, BuOH, r.t., 16 h, 46%.
EC50 Values in Micromolar for Inhibition of α2,3-Linked Sialic Acida
Cell lines were cultured for 3 days with 0–204.8 μM amide or carbamate-fluorinated sialic acids or DMSO vehicle control. The cells were stained with biotinylated MALII lectin that recognizes α2,3-linked sialic acids and streptavidin-PE. Lectin binding was determined by flow cytometry and is presented as mean percentage lectin binding ±SEM normalized to the control (n = 3). The relative inhibitory potency was calculated for the B16-F10 cell line by dividing the EC50 of SiaFAc (1) by the EC50 of the compound of interest.
Figure 2(a,b) Amide and carbamate-modified fluorinated sialic acids inhibit sialylation of B16-F10 cells. B16-F10 cells were treated with 0.1–204.8 μM amide (red) or carbamate (blue)-fluorinated sialic acids or dimethyl sulfoxide (DMSO) vehicle control. After 3 days, the cells were stained with biotinylated MALII (a) or SNA-I (b) that recognize α2,3-linked or α2,6-linked sialic acids, respectively, followed by streptavidin-PE staining. Binding of lectins was determined by flow cytometry and data are presented as mean percentage lectin binding ± standard error of the mean (SEM) normalized to the control (n = 3). The EC50 values were extrapolated for all compounds (Tables and S1). (c–f) Recovery of sialylation after acetamide and carbamate-fluorinated sialic acid treatment. B16-F10 cells were incubated for 3 days with 51.2 μM acetamide or carbamate-fluorinated sialic acids or DMSO control. Fluorinated sialic acids were removed from the culture and the cells were re-seeded. During a period of 6 days, sialylation was assessed daily by flow cytometry using MALII or SNA-I lectins. Graphs show recovery of α2,3-sialylation (c,d) or α2,6-sialylation (e,f) in time presented as mean percentage lectin binding ±SEM normalized to control (n = 3).
Figure 3(a) CMP–SiaFAc (from 5BO9, green carbons) was superposed onto cocrystalized CMP in the ST6Gal-I binding pocket (4JS2, white carbons and surface). Distances (Å) to nearest residues Gln235, Tyr354, and Phe359 are indicated with black dashes. (b) Cocrystalized CMP–Sia (green carbons) in the CMAS binding pocket (1QWJ, domain D, white carbons). Between the HC (Leu121, Ile124, Tyr216, and Leu228) and the sialic acid pyranose ring, there is a hydrophilic gate (Ser120, Gln141, pink carbons). Hydrogen bonds are depicted with orange lines. (c,d) Energy-minimized poses of SiaFPen (6) [green carbons, (c)] and SiaFPoc (7) [green carbons, (d)] in the CMAS binding pocket (1QWJ, domain D, white carbons). Hydrogen bonds are depicted with orange lines. The hydrophilic gate accommodates the carbamate [SiaFPoc, (d)] more favorably than the amide [SiaFPen, (c)] because of an additional polar interaction with Ser120.
Figure 4B16-F10 cells were incubated for indicated time points with 51.2 μM fluorinated sialic acid analogues or DMSO control. After sample preparation, the CMP–SiaFR (a) and CMP–Sia (b) levels were analyzed using reverse-phase ion pairing chromatography coupled to a triple quadrupole mass spectrometer operating in negative ion mode and presented as their abundance in the nucleotide sugar pool ±SEM (n = 2).