Literature DB >> 3054117

Global variation in G+C content along vertebrate genome DNA. Possible correlation with chromosome band structures.

T Ikemura1, S Aota.   

Abstract

The global, rather than local, variation in G+C content along the nuclear DNA sequences of various organisms was studied using GenBank sequence data. When long DNA sequences of the genomes of Escherichia coli and Saccharomyces cerevisiae were examined, the levels of their G+C content (G+C%) were found to be within a narrow range around that of the whole genome. The G+C% levels for sequences of vertebrate genomes, however, were found to cover a wide range, showing that their genome is a mosaic of sequences with different G+C% levels, in each of which the sequence is fairly homogeneous in its G+C% for a very long distance. Through surveying a human genetic map and GenBank DNA sequences, the global variations in G+C% along the human genome DNA were found to be correlated with chromosome band structures.

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Year:  1988        PMID: 3054117     DOI: 10.1016/0022-2836(88)90086-1

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  39 in total

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Authors:  T Imanishi; T Gojobori
Journal:  J Mol Evol       Date:  1992-09       Impact factor: 2.395

2.  GC/AT-content spikes as genomic punctuation marks.

Authors:  Lingang Zhang; Simon Kasif; Charles R Cantor; Natalia E Broude
Journal:  Proc Natl Acad Sci U S A       Date:  2004-11-17       Impact factor: 11.205

Review 3.  Codon context.

Authors:  R H Buckingham
Journal:  Experientia       Date:  1990-12-01

4.  Codon usage tabulated from the GenBank genetic sequence data.

Authors:  K Wada; Y Wada; H Doi; F Ishibashi; T Gojobori; T Ikemura
Journal:  Nucleic Acids Res       Date:  1991-04-25       Impact factor: 16.971

5.  Codon usage changes and sequence dissimilarity between human and rat.

Authors:  D Mouchiroud; C Gautier
Journal:  J Mol Evol       Date:  1990-08       Impact factor: 2.395

Review 6.  Recent evidence for evolution of the genetic code.

Authors:  S Osawa; T H Jukes; K Watanabe; A Muto
Journal:  Microbiol Rev       Date:  1992-03

Review 7.  Chromosome bands, their chromatin flavors, and their functional features.

Authors:  G P Holmquist
Journal:  Am J Hum Genet       Date:  1992-07       Impact factor: 11.025

8.  Essential factors determining codon usage in ubiquitin genes.

Authors:  K Mita; S Ichimura; M Nenoi
Journal:  J Mol Evol       Date:  1991-09       Impact factor: 2.395

9.  Robustness of maximum likelihood tree estimation against different patterns of base substitutions.

Authors:  K Fukami-Kobayashi; Y Tateno
Journal:  J Mol Evol       Date:  1991-01       Impact factor: 2.395

10.  Mammalian gene evolution: nucleotide sequence divergence between mouse and rat.

Authors:  K H Wolfe; P M Sharp
Journal:  J Mol Evol       Date:  1993-10       Impact factor: 2.395

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