Literature DB >> 30538273

Post-GWAS in prostate cancer: from genetic association to biological contribution.

Samaneh Farashi1,2, Thomas Kryza1,2, Judith Clements1,2, Jyotsna Batra3,4.   

Abstract

Genome-wide association studies (GWAS) have been successful in deciphering the genetic component of predisposition to many human complex diseases including prostate cancer. Germline variants identified by GWAS progressively unravelled the substantial knowledge gap concerning prostate cancer heritability. With the beginning of the post-GWAS era, more and more studies reveal that, in addition to their value as risk markers, germline variants can exert active roles in prostate oncogenesis. Consequently, current research efforts focus on exploring the biological mechanisms underlying specific susceptibility loci known as causal variants by applying novel and precise analytical methods to available GWAS data. Results obtained from these post-GWAS analyses have highlighted the potential of exploiting prostate cancer risk-associated germline variants to identify new gene networks and signalling pathways involved in prostate tumorigenesis. In this Review, we describe the molecular basis of several important prostate cancer-causal variants with an emphasis on using post-GWAS analysis to gain insight into cancer aetiology. In addition to discussing the current status of post-GWAS studies, we also summarize the main molecular mechanisms of potential causal variants at prostate cancer risk loci and explore the major challenges in moving from association to functional studies and their implication in clinical translation.

Entities:  

Mesh:

Year:  2019        PMID: 30538273     DOI: 10.1038/s41568-018-0087-3

Source DB:  PubMed          Journal:  Nat Rev Cancer        ISSN: 1474-175X            Impact factor:   60.716


  24 in total

1.  Tumor somatic mutations also existing as germline polymorphisms may help to identify functional SNPs from genome-wide association studies.

Authors:  Ivan P Gorlov; Xiangjun Xia; Spiridon Tsavachidis; Olga Y Gorlova; Christopher I Amos
Journal:  Carcinogenesis       Date:  2020-10-15       Impact factor: 4.944

2.  Multiple haplotype-based analyses provide genetic and evolutionary insights into tomato fruit weight and composition.

Authors:  Jiantao Zhao; Christopher Sauvage; Frédérique Bitton; Mathilde Causse
Journal:  Hortic Res       Date:  2022-01-18       Impact factor: 6.793

Review 3.  Recent innovations and in-depth aspects of post-genome wide association study (Post-GWAS) to understand the genetic basis of complex phenotypes.

Authors:  Zahra Mortezaei; Mahmood Tavallaei
Journal:  Heredity (Edinb)       Date:  2021-10-23       Impact factor: 3.821

4.  Identifying genes targeted by disease-associated non-coding SNPs with a protein knowledge graph.

Authors:  Wytze J Vlietstra; Rein Vos; Erik M van Mulligen; Guido W Jenster; Jan A Kors
Journal:  PLoS One       Date:  2022-07-13       Impact factor: 3.752

5.  Correlation between Genomic Variants and Worldwide Epidemiology of Prostate Cancer.

Authors:  Giovana Miranda Vieira; Laura Patrícia Albarello Gellen; Diana Feio da Veiga Borges Leal; Lucas Favacho Pastana; Lui Wallacy Morikawa Souza Vinagre; Vitória Teixeira Aquino; Marianne Rodrigues Fernandes; Paulo Pimentel de Assumpção; Rommel Mario Rodríguez Burbano; Sidney Emanuel Batista Dos Santos; Ney Pereira Carneiro Dos Santos
Journal:  Genes (Basel)       Date:  2022-06-10       Impact factor: 4.141

Review 6.  A Case-Based Clinical Approach to the Investigation, Management and Screening of Families with BRCA2 Related Prostate Cancer.

Authors:  Bradley King; Jana McHugh; Katie Snape
Journal:  Appl Clin Genet       Date:  2021-05-20

7.  Meta-Analyses of Splicing and Expression Quantitative Trait Loci Identified Susceptibility Genes of Glioma.

Authors:  C Pawan K Patro; Darryl Nousome; Rose K Lai
Journal:  Front Genet       Date:  2021-04-15       Impact factor: 4.772

8.  Age-Related Changes in Zinc, Copper and Selenium Levels in the Human Prostate.

Authors:  Adam Daragó; Michał Klimczak; Joanna Stragierowicz; Mateusz Jobczyk; Anna Kilanowicz
Journal:  Nutrients       Date:  2021-04-21       Impact factor: 5.717

Review 9.  The oncological relevance of fragile sites in cancer.

Authors:  Benjamin S Simpson; Hayley Pye; Hayley C Whitaker
Journal:  Commun Biol       Date:  2021-05-12

10.  Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.

Authors:  Nadav Brandes; Nathan Linial; Michal Linial
Journal:  Sci Rep       Date:  2021-07-21       Impact factor: 4.379

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