Literature DB >> 30537300

Utility and implications of exome sequencing in early-onset Parkinson's disease.

Joanne Trinh1, Katja Lohmann1, Hauke Baumann1, Alexander Balck1,2, Max Borsche1,2, Norbert Brüggemann1,2, Leon Dure3, Marissa Dean3, Jens Volkmann4, Sinem Tunc1,2, Jannik Prasuhn1,2, Heike Pawlack1, Sophie Imhoff1, Christina M Lill1, Meike Kasten1,5, Peter Bauer6, Arndt Rolfs6,7, Christine Klein1.   

Abstract

BACKGROUND: Although the genetic load is high in early-onset Parkinson's disease, thorough investigation of the genetic diagnostic yield has yet to be established. The objectives of this study were to assess variants in known genes for PD and other movement disorders and to find new candidates in 50 patients with early-onset PD.
METHODS: We searched for variants either within genes listed by the International Parkinson and Movement Disorder Society Task Force on Genetic Nomenclature or rare homozygous variants in novel candidate genes. Further, exome data from 1148 European PD patients (International Parkinson Disease Genomics Consortium) were used for association testing.
RESULTS: Seven patients (14%) carried pathogenic or likely pathogenic variants in Parkin, PLA2G6, or GBA. In addition, rare missense variants in DNAJC13:p.R1830C and in PPM1K:p.Y352C were detected. SPG7:p.A510V and PPM1K:p.Y352C revealed significant association with PD risk (P < 0.05).
CONCLUSIONS: Although we identified pathogenic variants in 14% of our early-onset PD patients, the majority remain unexplained, and novel candidates need to be validated independently to better further evaluate their role in PD.
© 2018 International Parkinson and Movement Disorder Society. © 2018 International Parkinson and Movement Disorder Society.

Entities:  

Keywords:  Parkinson's disease; biomarker; lymphocyte activation gene-3

Mesh:

Substances:

Year:  2018        PMID: 30537300      PMCID: PMC8950081          DOI: 10.1002/mds.27559

Source DB:  PubMed          Journal:  Mov Disord        ISSN: 0885-3185            Impact factor:   10.338


  28 in total

1.  Role of parkin mutations in 111 community-based patients with early-onset parkinsonism.

Authors:  Martin Kann; Helfried Jacobs; Kathrin Mohrmann; Kirsten Schumacher; Katja Hedrich; Jennifer Garrels; Karin Wiegers; Eberhard Schwinger; Peter P Pramstaller; Xandra O Breakefield; Laurie J Ozelius; Peter Vieregge; Christine Klein
Journal:  Ann Neurol       Date:  2002-05       Impact factor: 10.422

2.  Using SIFT and PolyPhen to predict loss-of-function and gain-of-function mutations.

Authors:  Sarah E Flanagan; Ann-Marie Patch; Sian Ellard
Journal:  Genet Test Mol Biomarkers       Date:  2010-08

3.  Assessment of a Targeted Gene Panel for Identification of Genes Associated With Movement Disorders.

Authors:  Solveig Montaut; Christine Tranchant; Nathalie Drouot; Gabrielle Rudolf; Claire Guissart; Julien Tarabeux; Tristan Stemmelen; Amandine Velt; Cécile Fourrage; Patrick Nitschké; Bénédicte Gerard; Jean-Louis Mandel; Michel Koenig; Jamel Chelly; Mathieu Anheim
Journal:  JAMA Neurol       Date:  2018-10-01       Impact factor: 18.302

4.  Clinical spectrum of homozygous and heterozygous PINK1 mutations in a large German family with Parkinson disease: role of a single hit?

Authors:  Katja Hedrich; Johann Hagenah; Ana Djarmati; Anja Hiller; Thora Lohnau; Kathrin Lasek; Anne Grünewald; Rüdiger Hilker; Susanne Steinlechner; Heather Boston; Norman Kock; Christiane Schneider-Gold; Wolfram Kress; Hartwig Siebner; Ferdinand Binkofski; Rebekka Lencer; Alexander Münchau; Christine Klein
Journal:  Arch Neurol       Date:  2006-06

5.  Genetics of early-onset Parkinson's disease in Finland: exome sequencing and genome-wide association study.

Authors:  Ari Siitonen; Michael A Nalls; Dena Hernández; J Raphael Gibbs; Jinhui Ding; Pauli Ylikotila; Connor Edsall; Andrew Singleton; Kari Majamaa
Journal:  Neurobiol Aging       Date:  2017-02-02       Impact factor: 4.673

Review 6.  Epidemiology of Parkinson's disease.

Authors:  Lonneke M L de Lau; Monique M B Breteler
Journal:  Lancet Neurol       Date:  2006-06       Impact factor: 44.182

7.  Diagnostic exome sequencing in early-onset Parkinson's disease confirms VPS13C as a rare cause of autosomal-recessive Parkinson's disease.

Authors:  B Schormair; D Kemlink; B Mollenhauer; O Fiala; G Machetanz; J Roth; R Berutti; T M Strom; B Haslinger; C Trenkwalder; D Zahorakova; P Martasek; E Ruzicka; J Winkelmann
Journal:  Clin Genet       Date:  2018-01-24       Impact factor: 4.438

8.  Whole-Exome Sequencing in Familial Parkinson Disease.

Authors:  Janice L Farlow; Laurie A Robak; Kurt Hetrick; Kevin Bowling; Eric Boerwinkle; Zeynep H Coban-Akdemir; Tomasz Gambin; Richard A Gibbs; Shen Gu; Preti Jain; Joseph Jankovic; Shalini Jhangiani; Kaveeta Kaw; Dongbing Lai; Hai Lin; Hua Ling; Yunlong Liu; James R Lupski; Donna Muzny; Paula Porter; Elizabeth Pugh; Janson White; Kimberly Doheny; Richard M Myers; Joshua M Shulman; Tatiana Foroud
Journal:  JAMA Neurol       Date:  2016-01       Impact factor: 18.302

9.  Whole-exome sequencing of 228 patients with sporadic Parkinson's disease.

Authors:  Cynthia Sandor; Frantisek Honti; Wilfried Haerty; Konrad Szewczyk-Krolikowski; Paul Tomlinson; Sam Evetts; Stephanie Millin; Thomas Keane; Shane A McCarthy; Richard Durbin; Kevin Talbot; Michele Hu; Caleb Webber; Chris P Ponting; Richard Wade-Martins
Journal:  Sci Rep       Date:  2017-01-24       Impact factor: 4.379

10.  Identification of TMEM230 mutations in familial Parkinson's disease.

Authors:  Han-Xiang Deng; Yong Shi; Yi Yang; Kreshnik B Ahmeti; Nimrod Miller; Cao Huang; Lijun Cheng; Hong Zhai; Sheng Deng; Karen Nuytemans; Nicola J Corbett; Myung Jong Kim; Hao Deng; Beisha Tang; Ziquang Yang; Yanming Xu; Piu Chan; Bo Huang; Xiao-Ping Gao; Zhi Song; Zhenhua Liu; Faisal Fecto; Nailah Siddique; Tatiana Foroud; Joseph Jankovic; Bernardino Ghetti; Daniel A Nicholson; Dimitri Krainc; Onur Melen; Jeffery M Vance; Margaret A Pericak-Vance; Yong-Chao Ma; Ali H Rajput; Teepu Siddique
Journal:  Nat Genet       Date:  2016-06-06       Impact factor: 38.330

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  10 in total

1.  Genetic Analysis of Patients With Early-Onset Parkinson's Disease in Eastern China.

Authors:  Ping Hua; Yuwen Zhao; Qian Zeng; Lanting Li; Jingru Ren; Jifeng Guo; Beisha Tang; Weiguo Liu
Journal:  Front Aging Neurosci       Date:  2022-05-11       Impact factor: 5.702

2.  A glimpse of the genetics of young-onset Parkinson's disease in Central Asia.

Authors:  Rauan Kaiyrzhanov; Akbota Aitkulova; Jana Vandrovcova; David Murphy; Nazira Zharkinbekova; Chingiz Shashkin; Vadim Akhmetzhanov; Gulnaz Kaishibayeva; Altynay Karimova; Zhanybek Myrzayev; Malgorzata Murray; Talgat Khaibullin; John Hardy; Henry Houlden
Journal:  Mol Genet Genomic Med       Date:  2021-04-05       Impact factor: 2.473

Review 3.  Uses for humanised mouse models in precision medicine for neurodegenerative disease.

Authors:  Remya R Nair; Silvia Corrochano; Samanta Gasco; Charlotte Tibbit; David Thompson; Cheryl Maduro; Zeinab Ali; Pietro Fratta; Abraham Acevedo Arozena; Thomas J Cunningham; Elizabeth M C Fisher
Journal:  Mamm Genome       Date:  2019-06-15       Impact factor: 2.957

4.  The Role of Rare Coding Variants in Parkinson's Disease GWAS Loci.

Authors:  Elisabeth Luisa Germer; Sophie Imhoff; Carles Vilariño-Güell; Meike Kasten; Philip Seibler; Norbert Brüggemann; Christine Klein; Joanne Trinh
Journal:  Front Neurol       Date:  2019-12-13       Impact factor: 4.003

Review 5.  Astrocyte dysfunction in Parkinson's disease: from the perspectives of transmitted α-synuclein and genetic modulation.

Authors:  Changjing Wang; Tongtong Yang; Meiyu Liang; Junxia Xie; Ning Song
Journal:  Transl Neurodegener       Date:  2021-10-18       Impact factor: 8.014

6.  Mutated ATP10B increases Parkinson's disease risk by compromising lysosomal glucosylceramide export.

Authors:  Shaun Martin; Stefanie Smolders; Peter Vangheluwe; Christine Van Broeckhoven; Chris Van den Haute; Bavo Heeman; Sarah van Veen; David Crosiers; Igor Beletchi; Aline Verstraeten; Helena Gossye; Géraldine Gelders; Philippe Pals; Norin Nabil Hamouda; Sebastiaan Engelborghs; Jean-Jacques Martin; Jan Eggermont; Peter Paul De Deyn; Patrick Cras; Veerle Baekelandt
Journal:  Acta Neuropathol       Date:  2020-03-14       Impact factor: 17.088

7.  Whole exome sequencing identified a new compound heterozygous PRKN mutation in a Chinese family with early-onset Parkinson's disease.

Authors:  Tianbai Li; Daqing Kou; Yanhua Cui; Weidong Le
Journal:  Biosci Rep       Date:  2020-05-29       Impact factor: 3.840

8.  Extended Study of NUS1 Gene Variants in Parkinson's Disease.

Authors:  Lamei Yuan; Xiangyu Chen; Zhi Song; Weidong Le; Wen Zheng; Xin Liu; Hao Deng
Journal:  Front Neurol       Date:  2020-10-27       Impact factor: 4.003

9.  Parkin is the most common causative gene in a cohort of mainland Chinese patients with sporadic early-onset Parkinson's disease.

Authors:  Yanyan Jiang; Meng Yu; Jing Chen; Hong Zhou; Wei Sun; Yunchuang Sun; Fan Li; Luhua Wei; Elmar H Pinkhardt; Lin Zhang; Yun Yuan; Zhaoxia Wang
Journal:  Brain Behav       Date:  2020-07-16       Impact factor: 2.708

10.  JWES: a new pipeline for whole genome/exome sequence data processing, management, and gene-variant discovery, annotation, prediction, and genotyping.

Authors:  Zeeshan Ahmed; Eduard Gibert Renart; Deepshikha Mishra; Saman Zeeshan
Journal:  FEBS Open Bio       Date:  2021-08-11       Impact factor: 2.693

  10 in total

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