Literature DB >> 30535383

RNAcentral: a hub of information for non-coding RNA sequences.

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Abstract

Entities:  

Year:  2019        PMID： 30535383      PMCID： PMC6323998          DOI： 10.1093/nar/gky1206

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


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Nucleic Acids Res., 2018, https://doi.org/10.1093/nar/gky1034 This article has been updated to correct an error in the author's name.
  22 in total

1.  Dynamic transcriptional and chromatin accessibility landscape of medaka embryogenesis.

Authors:  Yingshu Li; Yongjie Liu; Hang Yang; Ting Zhang; Kiyoshi Naruse; Qiang Tu
Journal:  Genome Res       Date:  2020-06-26       Impact factor: 9.043

2.  PLncDB V2.0: a comprehensive encyclopedia of plant long noncoding RNAs.

Authors:  Jingjing Jin; Peng Lu; Yalong Xu; Zefeng Li; Shizhou Yu; Jun Liu; Huan Wang; Nam-Hai Chua; Peijian Cao
Journal:  Nucleic Acids Res       Date:  2021-01-08       Impact factor: 16.971

3.  Pan-cancer analysis of transcripts encoding novel open-reading frames (nORFs) and their potential biological functions.

Authors:  Chaitanya Erady; Adam Boxall; Shraddha Puntambekar; N Suhas Jagannathan; Ruchi Chauhan; David Chong; Narendra Meena; Apurv Kulkarni; Bhagyashri Kasabe; Kethaki Prathivadi Bhayankaram; Yagnesh Umrania; Adam Andreani; Jean Nel; Matthew T Wayland; Cristina Pina; Kathryn S Lilley; Sudhakaran Prabakaran
Journal:  NPJ Genom Med       Date:  2021-01-25       Impact factor: 8.617

4.  RNA structure-wide discovery of functional interactions with multiplexed RNA motif library.

Authors:  Kaoru R Komatsu; Toshiki Taya; Sora Matsumoto; Emi Miyashita; Shunnichi Kashida; Hirohide Saito
Journal:  Nat Commun       Date:  2020-12-08       Impact factor: 14.919

5.  WIND (Workflow for pIRNAs aNd beyonD): a strategy for in-depth analysis of small RNA-seq data.

Authors:  Konstantinos Geles; Domenico Palumbo; Assunta Sellitto; Giorgio Giurato; Eleonora Cianflone; Fabiola Marino; Daniele Torella; Valeria Mirici Cappa; Giovanni Nassa; Roberta Tarallo; Alessandro Weisz; Francesca Rizzo
Journal:  F1000Res       Date:  2021-01-04

6.  Whole-genome sequencing of glioblastoma reveals enrichment of non-coding constraint mutations in known and novel genes.

Authors:  Sharadha Sakthikumar; Ananya Roy; Lulu Haseeb; Mats E Pettersson; Elisabeth Sundström; Voichita D Marinescu; Kerstin Lindblad-Toh; Karin Forsberg-Nilsson
Journal:  Genome Biol       Date:  2020-06-09       Impact factor: 13.583

7.  Lipotoxic Injury Differentially Regulates Brain Microvascular Gene Expression in Male Mice.

Authors:  Saivageethi Nuthikattu; Dragan Milenkovic; John C Rutledge; Amparo C Villablanca
Journal:  Nutrients       Date:  2020-06-13       Impact factor: 5.717

8.  PncStress: a manually curated database of experimentally validated stress-responsive non-coding RNAs in plants.

Authors:  Wenyi Wu; Yan Wu; Dahui Hu; Yincong Zhou; Yanshi Hu; Yujie Chen; Ming Chen
Journal:  Database (Oxford)       Date:  2020-01-01       Impact factor: 3.451

9.  Computational discovery of hidden breaks in 28S ribosomal RNAs across eukaryotes and consequences for RNA Integrity Numbers.

Authors:  Paschalis Natsidis; Philipp H Schiffer; Irepan Salvador-Martínez; Maximilian J Telford
Journal:  Sci Rep       Date:  2019-12-20       Impact factor: 4.379

10.  lncRNAKB, a knowledgebase of tissue-specific functional annotation and trait association of long noncoding RNA.

Authors:  Fayaz Seifuddin; Komudi Singh; Abhilash Suresh; Jennifer T Judy; Yun-Ching Chen; Vijender Chaitankar; Ilker Tunc; Xiangbo Ruan; Ping Li; Yi Chen; Haiming Cao; Richard S Lee; Fernando S Goes; Peter P Zandi; M Saleet Jafri; Mehdi Pirooznia
Journal:  Sci Data       Date:  2020-10-05       Impact factor: 6.444
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