Literature DB >> 30532512

A Robust Model-Free Feature Screening Method for Ultrahigh-Dimensional Data.

Jingnan Xue1, Faming Liang2.   

Abstract

Feature screening plays an important role in dimension reduction for ultrahigh-dimensional data. In this paper, we introduce a new feature screening method and establish its sure independence screening property under the ultrahigh-dimensional setting. The proposed method works based on the nonparanormal transformation and Henze-Zirkler's test; that is, it first transforms the response variable and features to Gaussian random variables using the nonparanormal transformation and then tests the dependence between the response variable and features using the Henze-Zirkler's test. The proposed method enjoys at least two merits. First, it is model-free, which avoids the specification of a particular model structure. Second, it is condition-free, which does not require any extra conditions except for some regularity conditions for high-dimensional feature screening. The numerical results indicate that, compared to the existing methods, the proposed method is more robust to the data generated from heavy-tailed distributions and/or complex models with interaction variables. The proposed method is applied to screening of anticancer drug response genes.

Entities:  

Keywords:  Gene Screening; Henze-Zirkler’s Test; Nonparanormal Transformation; Precision Medicine; Sure Independence Screening

Year:  2017        PMID: 30532512      PMCID: PMC6284821          DOI: 10.1080/10618600.2017.1328364

Source DB:  PubMed          Journal:  J Comput Graph Stat        ISSN: 1061-8600            Impact factor:   2.302


  12 in total

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2.  Discussion of "Sure Independence Screening for Ultra-High Dimensional Feature Space.

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Journal:  J R Stat Soc Series B Stat Methodol       Date:  2008-11       Impact factor: 4.488

3.  Model-Free Feature Screening for Ultrahigh Dimensional Discriminant Analysis.

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4.  Ultrahigh dimensional feature selection: beyond the linear model.

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Journal:  J Mach Learn Res       Date:  2009       Impact factor: 3.654

5.  Putative DNA/RNA helicase Schlafen-11 (SLFN11) sensitizes cancer cells to DNA-damaging agents.

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Journal:  J Natl Cancer Inst       Date:  2003-06-18       Impact factor: 13.506

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8.  The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity.

Authors:  Jordi Barretina; Giordano Caponigro; Nicolas Stransky; Kavitha Venkatesan; Adam A Margolin; Sungjoon Kim; Christopher J Wilson; Joseph Lehár; Gregory V Kryukov; Dmitriy Sonkin; Anupama Reddy; Manway Liu; Lauren Murray; Michael F Berger; John E Monahan; Paula Morais; Jodi Meltzer; Adam Korejwa; Judit Jané-Valbuena; Felipa A Mapa; Joseph Thibault; Eva Bric-Furlong; Pichai Raman; Aaron Shipway; Ingo H Engels; Jill Cheng; Guoying K Yu; Jianjun Yu; Peter Aspesi; Melanie de Silva; Kalpana Jagtap; Michael D Jones; Li Wang; Charles Hatton; Emanuele Palescandolo; Supriya Gupta; Scott Mahan; Carrie Sougnez; Robert C Onofrio; Ted Liefeld; Laura MacConaill; Wendy Winckler; Michael Reich; Nanxin Li; Jill P Mesirov; Stacey B Gabriel; Gad Getz; Kristin Ardlie; Vivien Chan; Vic E Myer; Barbara L Weber; Jeff Porter; Markus Warmuth; Peter Finan; Jennifer L Harris; Matthew Meyerson; Todd R Golub; Michael P Morrissey; William R Sellers; Robert Schlegel; Levi A Garraway
Journal:  Nature       Date:  2012-03-28       Impact factor: 49.962

9.  Use of NQO1 status as a selective biomarker for oesophageal squamous cell carcinomas with greater sensitivity to 17-AAG.

Authors:  Katie E Hadley; Denver T Hendricks
Journal:  BMC Cancer       Date:  2014-05-15       Impact factor: 4.430

10.  A meta-analysis approach for characterizing pan-cancer mechanisms of drug sensitivity in cell lines.

Authors:  Kendric Wang; Raunak Shrestha; Alexander W Wyatt; Anupama Reddy; Joseph Lehár; Yuzhou Wang; Anna Lapuk; Colin C Collins
Journal:  PLoS One       Date:  2014-07-18       Impact factor: 3.240

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  2 in total

1.  Markov Neighborhood Regression for High-Dimensional Inference.

Authors:  Faming Liang; Jingnan Xue; Bochao Jia
Journal:  J Am Stat Assoc       Date:  2020-10-28       Impact factor: 4.369

2.  Drug sensitivity prediction with high-dimensional mixture regression.

Authors:  Qianyun Li; Runmin Shi; Faming Liang
Journal:  PLoS One       Date:  2019-02-27       Impact factor: 3.240

  2 in total

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