| Literature DB >> 30524309 |
Xia-An Bi1, Jie Chen1, Qi Sun1, Yingchao Liu1, Yang Wang1, Xianhao Luo1.
Abstract
Asperger syndrome (AS) is subtype of autism spectrum disorder (ASD). Diagnosis and pathological analysis of AS through resting-state fMRI data is one of the hot topics in brain science. We employed a new model called the genetic-evolutionary random Support Vector Machine cluster (GE-RSVMC) to classify AS and normal people, and search for lesions. The model innovatively integrates the methods of the cluster and genetic evolution to improve the performance of the model. We randomly selected samples and sample features to construct GE-RSVMC, and then used the cluster to classify and extract lesions according to classification results. The model was validated by data of 157 participants (86 AS and 71 health controls) in ABIDE database. The classification accuracy of the model reached to 97.5% and we discovered the brain regions with significant differences, such as the Angular gyrus (ANG.R), Precuneus (PCUN.R), Caudate nucleus (CAU.R), Cuneus (CUN.R) and so on. Our method provides a new perspective for the diagnosis and treatment of AS, and a universal framework for other brain science research as the model has excellent generalization performance.Entities:
Keywords: Asperger syndrome; abnormal brain regions; classification; functional connectivity; genetic-evolutionary random SVM cluster
Year: 2018 PMID: 30524309 PMCID: PMC6262410 DOI: 10.3389/fphys.2018.01646
Source DB: PubMed Journal: Front Physiol ISSN: 1664-042X Impact factor: 4.566
Basic information of AS and HC.
| Variables (Mean ± SD) | AS ( | HC ( | |
|---|---|---|---|
| Gender (M/F) | 54/9 | 57/15 | 0.321a |
| Age (years) | 13.62 ± 5.50 | 12.80 ± 2.23 | 0.246b |
| Full IQ∗ | 96.71 ± 40.16 | 108.78 ± 12.14 | 0.017b |
| VIQ∗∗ | 117.16 ± 14.62 | 108.28 ± 13.15 | 0.003b |
| PIQ∗∗∗ | 62.16 ± 57.07 | 107.42 ± 12.95 | 0.000b |
FIGURE 1The design of the genetic-evolutionary random SVM cluster.
FIGURE 2Changes of the accuracy during the genetic evolutionary process.
FIGURE 3The relationship curve between the evolutionary times and the quantity of base classifiers.
FIGURE 4Accuracies of various models.
Mean accuracies of various model performances.
| Model | Accuracy |
|---|---|
| Random Forest | 73.4% |
| Random SVM cluster | 74.6% |
| Genetic-evolutionary random SVM cluster | 88.4% |
FIGURE 5The important features among brain regions.
FIGURE 6The accuracy of the random SVM cluster with different candidate set of optimal features.
FIGURE 7The frequency of the brain region.
The brain regions with a frequency of 10.
| ID of brain region | Brain region | Full name of brain region | Shorter form of brain region |
|---|---|---|---|
| 24 | Frontal_Sup_Medial_R | Superior frontal gyrus, medial | SFGmed.R |
| 66 | Angular_R | Angular gyrus | ANG.R |
| 83 | Temporal_Pole_Sup_L | Temporal pole: superior temporal gyrus | TPOsup.L |
The brain regions with a frequency of 8.
| ID of brain region | Brain region | Full name of brain region | Shorter form of brain region |
|---|---|---|---|
| 7 | Frontal_Mid_L | Middle frontal gyrus | MFG.L |
| 17 | Rolandic_Oper_L | Rolandic operculum | ROL.L |
| 33 | Cingulum_Mid_L | Median cingulate and paracingulate gyri | DCG.L |
| 76 | Pallidum_R | Lenticular nucleus, pallidum | PAL.R |
The brain regions with a frequency of 9.
| ID of brain region | Brain region | Full name of brain region | Shorter form of brain region |
|---|---|---|---|
| 14 | Frontal_Inf_Tri_R | Inferior frontal gyrus, triangular part | IFGtriang.R |
| 43 | Calcarine_L | Calcarine fissure and surrounding cortex | CAL.L |
| 46 | Cuneus_R | Cuneus | CUN.R |
| 68 | Precuneus_R | Precuneus | PCUN.R |
| 72 | Caudate_R | Caudate nucleus | CAU.R |
| 84 | Temporal_Pole_Sup_R | Temporal pole: superior temporal gyrus | TPOsup.R |