Literature DB >> 30523762

In vitro and in silico assessment of the developability of a designed monoclonal antibody library.

Adriana-Michelle Wolf Pérez1,2, Pietro Sormanni3, Jonathan Sonne Andersen4, Laila Ismail Sakhnini5, Ileana Rodriguez-Leon6, Jais Rose Bjelke7, Annette Juhl Gajhede1, Leonardo De Maria8, Daniel E Otzen2, Michele Vendruscolo3, Nikolai Lorenzen1.   

Abstract

Despite major advances in antibody discovery technologies, the successful development of monoclonal antibodies (mAbs) into effective therapeutic and diagnostic agents can often be impeded by developability liabilities, such as poor expression, low solubility, high viscosity and aggregation. Therefore, strategies to predict at the early phases of antibody development the risk of late-stage failure of antibody candidates are highly valuable. In this work, we employ the in silico solubility predictor CamSol to design a library of 17 variants of a humanized mAb predicted to span a broad range of solubility values, and we examine their developability potential with a battery of commonly used in vitro and in silico assays. Our results demonstrate the ability of CamSol to rationally enhance mAb developability, and provide a quantitative comparison of in vitro developability measurements with each other and with more resource-intensive solubility measurements, as well as with in silico predictors that offer a potentially faster and cheaper alternative. We observed a strong correlation between predicted and experimentally determined solubility values, as well as with measurements obtained using a panel of in vitro developability assays that probe non-specific interactions. These results indicate that computational methods have the potential to reduce or eliminate the need of carrying out laborious in vitro quality controls for large numbers of lead candidates. Overall, our study provides support to the emerging view that the implementation of in silico tools in antibody discovery campaigns can ensure rapid and early selection of antibodies with optimal developability potential.

Keywords:  biophysical properties; computational predictions; developability assessment; monoclonal antibodies

Mesh:

Substances:

Year:  2019        PMID: 30523762      PMCID: PMC6380425          DOI: 10.1080/19420862.2018.1556082

Source DB:  PubMed          Journal:  MAbs        ISSN: 1942-0862            Impact factor:   5.857


  52 in total

1.  Stability of monoclonal antibodies at high-concentration: head-to-head comparison of the IgG1 and IgG4 subclass.

Authors:  Martin S Neergaard; Anders D Nielsen; Henrik Parshad; Marco Van De Weert
Journal:  J Pharm Sci       Date:  2013-11-26       Impact factor: 3.534

2.  Cross-interaction chromatography: a rapid method to identify highly soluble monoclonal antibody candidates.

Authors:  Steven A Jacobs; Sheng-Jiun Wu; Yiqing Feng; Deidra Bethea; Karyn T O'Neil
Journal:  Pharm Res       Date:  2009-11-13       Impact factor: 4.200

3.  The CamSol method of rational design of protein mutants with enhanced solubility.

Authors:  Pietro Sormanni; Francesco A Aprile; Michele Vendruscolo
Journal:  J Mol Biol       Date:  2014-10-14       Impact factor: 5.469

4.  In silico selection of therapeutic antibodies for development: viscosity, clearance, and chemical stability.

Authors:  Vikas K Sharma; Thomas W Patapoff; Bruce Kabakoff; Satyan Pai; Eric Hilario; Boyan Zhang; Charlene Li; Oleg Borisov; Robert F Kelley; Ilya Chorny; Joe Z Zhou; Ken A Dill; Trevor E Swartz
Journal:  Proc Natl Acad Sci U S A       Date:  2014-12-15       Impact factor: 11.205

Review 5.  Developability assessment during the selection of novel therapeutic antibodies.

Authors:  Alexander Jarasch; Hans Koll; Joerg T Regula; Martin Bader; Apollon Papadimitriou; Hubert Kettenberger
Journal:  J Pharm Sci       Date:  2015-03-26       Impact factor: 3.534

6.  SODA: prediction of protein solubility from disorder and aggregation propensity.

Authors:  Lisanna Paladin; Damiano Piovesan; Silvio C E Tosatto
Journal:  Nucleic Acids Res       Date:  2017-07-03       Impact factor: 16.971

7.  Aggregation-resistant domain antibodies engineered with charged mutations near the edges of the complementarity-determining regions.

Authors:  Joseph M Perchiacca; Ali Reza A Ladiwala; Moumita Bhattacharya; Peter M Tessier
Journal:  Protein Eng Des Sel       Date:  2012-07-27       Impact factor: 1.650

8.  Viscosity of high concentration protein formulations of monoclonal antibodies of the IgG1 and IgG4 subclass - prediction of viscosity through protein-protein interaction measurements.

Authors:  Martin S Neergaard; Devendra S Kalonia; Henrik Parshad; Anders D Nielsen; Eva H Møller; Marco van de Weert
Journal:  Eur J Pharm Sci       Date:  2013-04-26       Impact factor: 4.384

9.  Measurements of Monoclonal Antibody Self-Association Are Correlated with Complex Biophysical Properties.

Authors:  Steven B Geng; Michael Wittekind; Adam Vigil; Peter M Tessier
Journal:  Mol Pharm       Date:  2016-04-19       Impact factor: 4.939

10.  A single amino acid substitution abolishes the heterogeneity of chimeric mouse/human (IgG4) antibody.

Authors:  S Angal; D J King; M W Bodmer; A Turner; A D Lawson; G Roberts; B Pedley; J R Adair
Journal:  Mol Immunol       Date:  1993-01       Impact factor: 4.407

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  21 in total

1.  High-throughput developability assays enable library-scale identification of producible protein scaffold variants.

Authors:  Alexander W Golinski; Katelynn M Mischler; Sidharth Laxminarayan; Nicole L Neurock; Matthew Fossing; Hannah Pichman; Stefano Martiniani; Benjamin J Hackel
Journal:  Proc Natl Acad Sci U S A       Date:  2021-06-08       Impact factor: 11.205

2.  Two physics-based models for pH-dependent calculations of protein solubility.

Authors:  Velin Z Spassov; Helen Kemmish; Lisa Yan
Journal:  Protein Sci       Date:  2022-05       Impact factor: 6.725

3.  Computational maturation of a single-domain antibody against Aβ42 aggregation.

Authors:  Jiacheng Lin; Chiara Figazzolo; Michael A Metrick; Pietro Sormanni; Michele Vendruscolo
Journal:  Chem Sci       Date:  2021-10-07       Impact factor: 9.825

Review 4.  Current advances in biopharmaceutical informatics: guidelines, impact and challenges in the computational developability assessment of antibody therapeutics.

Authors:  Rahul Khetan; Robin Curtis; Charlotte M Deane; Johannes Thorling Hadsund; Uddipan Kar; Konrad Krawczyk; Daisuke Kuroda; Sarah A Robinson; Pietro Sormanni; Kouhei Tsumoto; Jim Warwicker; Andrew C R Martin
Journal:  MAbs       Date:  2022 Jan-Dec       Impact factor: 5.857

Review 5.  Advances in the Production and Batch Reformatting of Phage Antibody Libraries.

Authors:  Rose H Reader; Robert G Workman; Ben C Maddison; Kevin C Gough
Journal:  Mol Biotechnol       Date:  2019-11       Impact factor: 2.695

6.  Surface patches on recombinant erythropoietin predict protein solubility: engineering proteins to minimise aggregation.

Authors:  M Alejandro Carballo-Amador; Edward A McKenzie; Alan J Dickson; Jim Warwicker
Journal:  BMC Biotechnol       Date:  2019-05-09       Impact factor: 2.563

7.  A rationally designed bicyclic peptide remodels Aβ42 aggregation in vitro and reduces its toxicity in a worm model of Alzheimer's disease.

Authors:  Tatsuya Ikenoue; Francesco A Aprile; Pietro Sormanni; Francesco S Ruggeri; Michele Perni; Gabriella T Heller; Christian P Haas; Christoph Middel; Ryan Limbocker; Benedetta Mannini; Thomas C T Michaels; Tuomas P J Knowles; Christopher M Dobson; Michele Vendruscolo
Journal:  Sci Rep       Date:  2020-09-17       Impact factor: 4.379

Review 8.  Phage Display Derived Monoclonal Antibodies: From Bench to Bedside.

Authors:  Mohamed A Alfaleh; Hashem O Alsaab; Ahmad Bakur Mahmoud; Almohanad A Alkayyal; Martina L Jones; Stephen M Mahler; Anwar M Hashem
Journal:  Front Immunol       Date:  2020-08-28       Impact factor: 7.561

9.  Electrostatic interactions modulate the differential aggregation propensities of IgG1 and IgG4P antibodies and inform charged residue substitutions for improved developability.

Authors:  James T Heads; Richard Lamb; Sebastian Kelm; Ralph Adams; Peter Elliott; Kerry Tyson; Sarfaraj Topia; Shauna West; Ruodan Nan; Alison Turner; Alastair D G Lawson
Journal:  Protein Eng Des Sel       Date:  2019-12-31       Impact factor: 1.650

10.  An accelerated surface-mediated stress assay of antibody instability for developability studies.

Authors:  Marie R G Kopp; Adriana-Michelle Wolf Pérez; Marta Virginia Zucca; Umberto Capasso Palmiero; Brigitte Friedrichsen; Nikolai Lorenzen; Paolo Arosio
Journal:  MAbs       Date:  2020 Jan-Dec       Impact factor: 5.857

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