| Literature DB >> 30523673 |
Ju Qiao1, Qian-Nan Jia1, Hong-Zhong Jin1.
Abstract
BACKGROUND: The present study carried out a meta-analysis to investigate whether the interleukin-1 receptor antagonist (IL-1RN) VNTR polymorphism and three IL-10 single-nucleotide polymorphisms (SNPs) rs1800896, rs3021097, and rs1800872 are associated with psoriasis risk.Entities:
Keywords: interleukin-1 receptor antagonist; interleukin-10; polymorphism; psoriasis
Mesh:
Substances:
Year: 2018 PMID: 30523673 PMCID: PMC6382441 DOI: 10.1002/mgg3.512
Source DB: PubMed Journal: Mol Genet Genomic Med ISSN: 2324-9269 Impact factor: 2.183
Figure 1Process of study selection
Characteristics of the studies evaluating the relationship between the IL‐1RN VNTR polymorphism and psoriasis risk
| Author | Journal | Year | Country | Ethnicity | Controls | Cases | Male in controls (%) | Male in cases (%) | Genotyping method | Controls selection | HWE |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Tarlow | Br J Dermatol | 1997 | UK and Germany | Caucasians | 331 | 271 | Not available | Not available | PCR assay | Not available | Yes |
| Liu | Natl Med J China | 1998 | China | Asians | 130 | 82 | Not available | 56.1 | PCR assay | Hospital | Yes |
| Peng | Immunol J | 1999 | China | Asians | 85 | 38 | Not available | 63.2 | PCR assay | Population | Yes |
| Li | J Clin Dermatol | 1999 | China | Asians | 30 | 30 | Not available | 53.3 | PCR assay | Not available | Yes |
| Reich | J Invest Dermatol | 2002 | Germany | Caucasians | 345 | 231 | 52.8 | 65.4 | PCR assay | Hospital | Yes |
| Peddle | Ann Rheum Dis | 2005 | Canada | Caucasians | 95 | 226 | Not available | 52.2 | PCR assay | Not available | Yes |
| Chang | Br J Dermatol | 2007 | China | Asians | 210 | 272 | Not available | 64.7 | PCR assay | Hospital | Yes |
| Moorchung | Indian J Dermatol | 2015 | India | Asians | 243 | 112 | Not available | 56.3 | PCR assay | Hospital | Yes |
HWE: Hardy–Weinberg equilibrium; IL‐1RN VNTR: interleukin‐1 receptor antagonist variable number tandem repeat; PCR: polymerase chain reaction; UK: United Kingdom.
Characteristics of the included studies assessing the association between the IL‐10 polymorphisms and psoriasis risk
| Author | Journal | Year | Country | Ethnicity | Controls | Cases | Male in controls (%) | Male in cases (%) | Genotyping method | Selection of controls | IL‐10 polymorphism |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Reich | J Invest Dermatol | 1999 | Germany | Caucasian | 123 | 151 | 54.5 | 63.6 | Sequencing analysis | Population | rs1800896 |
| Craven | Br J Dermatol | 2001 | UK | Caucasian | 330 | 78 | Not available | 41.7 | PCR assay | Hospital | rs1800896 |
| Peddle | Ann Rheum Dis | 2005 | Canada | Caucasian | 95 | 226 | Not available | 52.2 | PCR assay | Not available | rs1800896 |
| Chang | Br J Dermatol | 2007 | China | Asian | 210 | 272 | Not available | 64.7 | Sequencing analysis | Hospital | rs1800896, rs3021097, rs1800872 |
| Wongpiyabovorn | Clin Exp Dermatol | 2008 | Thailand | Asian | 155 | 139 | 16.1 | 56.8 | PCR‐RFLP | Population | rs1800896 and rs1800872 |
| Karam | Cytokine | 2014 | Egypt | Caucasian | 120 | 110 | 35.8 | 24.5 | PCR‐RFLP | Not available | rs1800896 |
| Indhumathi | Hum Immunol | 2017 | India | Asian | 360 | 360 | 80.0 | 81.1 | TaqMan 5’ allele discrimination assay | Not available | rs1800896 and rs3021097 |
IL‐10: interleukin‐10; PCR: polymerase chain reaction; PCR‐RFLP: polymerase chain reaction–restriction fragment length polymorphism; UK: United Kingdom.
Figure 2(a) Sample sizes of the studies assessing the interleukin‐1 receptor antagonist variable number tandem repeat polymorphism and risk of psoriasis from 1997 to 2015; (b) Sample sizes of the studies assessing the interleukin‐10 polymorphism rs1800896 from 1999 to 2017
Summary of results for meta‐analyses
| Polymorphism | Dominant model | Recessive model | Additive model | Allelic model | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OR (95% CI) |
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| OR (95% CI) |
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| OR (95% CI) |
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| OR (95% CI) |
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| |
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| All ( | 1.33 (0.76–2.35) | 0.317 | 0.021 | 1.77 (0.65–4.82) | 0.262 | 0.001 | 1.80 (0.64–5.09) | 0.266 | 0.005 | 1.16 (0.89–1.50) | 0.279 | 0.003 |
| Asians ( | 1.53 (0.59–3.98) | 0.379 | 0.019 | 2.38 (0.63–9.02) | 0.201 | 0.003 | 2.65 (0.55–12.87) | 0.226 | 0.006 | 1.27 (0.73–2.23) | 0.403 | 0.001 |
| Caucasians ( | 0.98 (0.70–1.36) | 0.881 | Not applicable | 0.83 (0.45–1.55) | 0.566 | Not applicable | 0.84 (0.44–1.58) | 0.583 | Not applicable | 1.04 (0.88–1.23) | 0.669 | 0.677 |
|
| ||||||||||||
| All ( | 1.05 (0.85–1.29) | 0.672 | 0.184 | 1.18 (0.73–1.89) | 0.438 | 0.098 | 1.24 (0.76–2.04) | 0.395 | 0.147 | 1.03 (0.90–1.18) | 0.639 | 0.122 |
| Asians ( | 0.96 (0.73–1.27) | 0.771 | 0.278 | 1.13 (0.56–2.28) | 0.733 | 0.494 | 1.09 (0.54–2.21) | 0.815 | 0.467 | 0.93 (0.75–1.16) | 0.513 | 0.276 |
| Caucasians ( | 1.17 (0.85–1.61) | 0.331 | 0.123 | 1.19 (0.60–2.34) | 0.623 | 0.025 | 1.30 (0.62–2.71) | 0.492 | 0.046 | 1.10 (0.93–1.31) | 0.262 | 0.111 |
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| All ( | Not applicable | Not applicable | Not applicable | Not applicable | Not applicable | Not applicable | Not applicable | Not applicable | Not applicable | 1.17 (0.88–1.56) | 0.288 | 0.092 |
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| All ( | Not applicable | Not applicable | Not applicable | Not applicable | Not applicable | Not applicable | Not applicable | Not applicable | Not applicable | 1.01 (0.81–1.25) | 0.951 | 0.895 |
CI, confidence interval; IL‐1RN VNTR, interleukin‐1 receptor antagonist variable number tandem repeat; IL‐10, interleukin‐10; OR, odds ratio.
Dominant model: 22 + 2L versus LL for the IL‐1RN VNTR polymorphism; GG + GA versus AA for rs1800896.
Recessive model: 22 versus 2L + LL for the IL‐1RN VNTR polymorphism; GG versus GA + AA for rs1800896.
Additive model: 22 versus 2L versus LL for the IL‐1RN VNTR polymorphism; GG versus GA versus AA for rs1800896.
Allelic model: 2 allele versus L allele for the IL‐1RN VNTR polymorphism; G allele versus A allele for rs1800896; C allele versus T allele for rs3021097; C allele versus A allele for rs1800872.
Figure 3Forest plot of meta‐analysis with data on the association between the interleukin‐1 receptor antagonist variable number tandem repeat polymorphism and risk of psoriasis under allelic model
Figure 4Forest plot of meta‐analysis with data on the association between the interleukin‐10 polymorphism rs1800896 under allelic model
Figure 5Begg's funnel plot for meta‐analysis of the interleukin‐1 receptor antagonist variable number tandem repeat polymorphism
Figure 6Begg's funnel plot for meta‐analysis of the interleukin‐10 polymorphism rs1800896