Literature DB >> 30520984

MODELLING γ-H2AX FOCI INDUCTION TO MIMIC LIMITATIONS IN THE SCORING TECHNIQUE.

Sofia Barbieri1, Giorgio Baiocco1, Gabriele Babini1, Jacopo Morini1, Werner Friedland2, Manuela Buonanno3, Veljko Grilj3, David J Brenner3, Andrea Ottolenghi1.   

Abstract

An approach based on track-structure calculations has been developed to take account of artefacts occurring during γ-H2AX foci detection in 2D images of samples analyzed through immunocytochemistry. The need of this works stems from the observed saturation in foci yields measured after X-ray doses higher than few grays, hindering an unambiguous quantification of DNA damage and of radiation effectiveness. The proposed modelling approach allows to simulate the observer's point of view for foci scoring, mimicking the selection of a slice Δz of the cell nucleus due to the microscope depth of field, and applying a clustering algorithm to group together damages within a resolution parameter r. Calculation results were benchmarked with experimental measurements at an early time-point for mouse breast cancer cells, irradiated with X-ray doses in the range 0-5 Gy. The model is able to reproduce the saturation in experimental data.
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Year:  2019        PMID: 30520984      PMCID: PMC6525333          DOI: 10.1093/rpd/ncy217

Source DB:  PubMed          Journal:  Radiat Prot Dosimetry        ISSN: 0144-8420            Impact factor:   0.972


  9 in total

1.  Fully automated interpretation of ionizing radiation-induced γH2AX foci by the novel pattern recognition system AKLIDES®.

Authors:  Roswitha Runge; Rico Hiemann; Maria Wendisch; Ulla Kasten-Pisula; Katja Storch; Klaus Zöphel; Christina Fritz; Dirk Roggenbuck; Gerd Wunderlich; Karsten Conrad; Joerg Kotzerke
Journal:  Int J Radiat Biol       Date:  2012-03-26       Impact factor: 2.694

2.  Fiji: an open-source platform for biological-image analysis.

Authors:  Johannes Schindelin; Ignacio Arganda-Carreras; Erwin Frise; Verena Kaynig; Mark Longair; Tobias Pietzsch; Stephan Preibisch; Curtis Rueden; Stephan Saalfeld; Benjamin Schmid; Jean-Yves Tinevez; Daniel James White; Volker Hartenstein; Kevin Eliceiri; Pavel Tomancak; Albert Cardona
Journal:  Nat Methods       Date:  2012-06-28       Impact factor: 28.547

3.  γH2AX foci as a measure of DNA damage: a computational approach to automatic analysis.

Authors:  Alesia N Ivashkevich; Olga A Martin; Andrea J Smith; Christophe E Redon; William M Bonner; Roger F Martin; Pavel N Lobachevsky
Journal:  Mutat Res       Date:  2011-01-07       Impact factor: 2.433

4.  Induction and Processing of the Radiation-Induced Gamma-H2AX Signal and Its Link to the Underlying Pattern of DSB: A Combined Experimental and Modelling Study.

Authors:  Francesco Tommasino; Thomas Friedrich; Burkhard Jakob; Barbara Meyer; Marco Durante; Michael Scholz
Journal:  PLoS One       Date:  2015-06-11       Impact factor: 3.240

5.  Use of the γ-H2AX assay to investigate DNA repair dynamics following multiple radiation exposures.

Authors:  Luca G Mariotti; Giacomo Pirovano; Kienan I Savage; Mihaela Ghita; Andrea Ottolenghi; Kevin M Prise; Giuseppe Schettino
Journal:  PLoS One       Date:  2013-11-29       Impact factor: 3.240

6.  γ-H2AX/53BP1/pKAP-1 foci and their linear tracks induced by in vitro exposure to radon and its progeny in human peripheral blood lymphocytes.

Authors:  Defang Ding; Yaping Zhang; Jing Wang; Xufei Wang; Dunhuang Fan; Linfeng He; Xuxia Zhang; Yun Gao; Qiang Li; Honghong Chen
Journal:  Sci Rep       Date:  2016-12-06       Impact factor: 4.379

7.  Chromatin organization revealed by nanostructure of irradiation induced γH2AX, 53BP1 and Rad51 foci.

Authors:  Judith Reindl; Stefanie Girst; Dietrich W M Walsh; Christoph Greubel; Benjamin Schwarz; Christian Siebenwirth; Guido A Drexler; Anna A Friedl; Günther Dollinger
Journal:  Sci Rep       Date:  2017-01-17       Impact factor: 4.379

8.  Comprehensive track-structure based evaluation of DNA damage by light ions from radiotherapy-relevant energies down to stopping.

Authors:  W Friedland; E Schmitt; P Kundrát; M Dingfelder; G Baiocco; S Barbieri; A Ottolenghi
Journal:  Sci Rep       Date:  2017-03-27       Impact factor: 4.379

9.  The Focinator - a new open-source tool for high-throughput foci evaluation of DNA damage.

Authors:  Sebastian Oeck; Nathalie M Malewicz; Sebastian Hurst; Justine Rudner; Verena Jendrossek
Journal:  Radiat Oncol       Date:  2015-08-04       Impact factor: 3.481

  9 in total
  4 in total

1.  A computational approach to quantifying miscounting of radiation-induced double-strand break immunofluorescent foci.

Authors:  Samuel P Ingram; John-William Warmenhoven; Nicholas T Henthorn; Amy L Chadiwck; Elham E Santina; Stephen J McMahon; Jan Schuemann; Norman F Kirkby; Ranald I Mackay; Karen J Kirkby; Michael J Merchant
Journal:  Commun Biol       Date:  2022-07-14

2.  Predicting DNA damage foci and their experimental readout with 2D microscopy: a unified approach applied to photon and neutron exposures.

Authors:  Sofia Barbieri; Gabriele Babini; Jacopo Morini; Werner Friedland; Manuela Buonanno; Veljko Grilj; David J Brenner; Andrea Ottolenghi; Giorgio Baiocco
Journal:  Sci Rep       Date:  2019-09-30       Impact factor: 4.379

3.  Assessment of Radio-Induced Damage in Endothelial Cells Irradiated with 40 kVp, 220 kVp, and 4 MV X-rays by Means of Micro and Nanodosimetric Calculations.

Authors:  Nicolas Tang; Marta Bueno; Sylvain Meylan; Yann Perrot; Hoang N Tran; Amélie Freneau; Morgane Dos Santos; Aurélie Vaurijoux; Gaëtan Gruel; Mario A Bernal; Marie-Claude Bordage; Dimitris Emfietzoglou; Ziad Francis; Susanna Guatelli; Vladimir Ivanchenko; Mathieu Karamitros; Ioanna Kyriakou; Wook-Geun Shin; Sébastien Incerti; Carmen Villagrasa
Journal:  Int J Mol Sci       Date:  2019-12-09       Impact factor: 5.923

4.  Fully integrated Monte Carlo simulation for evaluating radiation induced DNA damage and subsequent repair using Geant4-DNA.

Authors:  Dousatsu Sakata; Oleg Belov; Marie-Claude Bordage; Dimitris Emfietzoglou; Susanna Guatelli; Taku Inaniwa; Vladimir Ivanchenko; Mathieu Karamitros; Ioanna Kyriakou; Nathanael Lampe; Ivan Petrovic; Aleksandra Ristic-Fira; Wook-Geun Shin; Sebastien Incerti
Journal:  Sci Rep       Date:  2020-11-27       Impact factor: 4.379

  4 in total

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