Literature DB >> 30520871

A reference standard for genome biology.

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Abstract

Mesh：

Year:  2018        PMID： 30520871     DOI： 10.1038/nbt.4318

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN： 1087-0156            Impact factor:   54.908


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  10 in total

1.  Draft genome assemblies using sequencing reads from Oxford Nanopore Technology and Illumina platforms for four species of North American Fundulus killifish.

Authors:  Lisa K Johnson; Ruta Sahasrabudhe; James Anthony Gill; Jennifer L Roach; Lutz Froenicke; C Titus Brown; Andrew Whitehead
Journal:  Gigascience       Date:  2020-06-01       Impact factor: 6.524

2.  The Versatility of SMRT Sequencing.

Authors:  Matthew S Hestand; Adam Ameur
Journal:  Genes (Basel)       Date:  2019-01-04       Impact factor: 4.096

3.  Maximizing binary interactome mapping with a minimal number of assays.

Authors:  Soon Gang Choi; Julien Olivet; Patricia Cassonnet; Pierre-Olivier Vidalain; Katja Luck; Luke Lambourne; Kerstin Spirohn; Irma Lemmens; Mélanie Dos Santos; Caroline Demeret; Louis Jones; Sudharshan Rangarajan; Wenting Bian; Eloi P Coutant; Yves L Janin; Sylvie van der Werf; Philipp Trepte; Erich E Wanker; Javier De Las Rivas; Jan Tavernier; Jean-Claude Twizere; Tong Hao; David E Hill; Marc Vidal; Michael A Calderwood; Yves Jacob
Journal:  Nat Commun       Date:  2019-08-29       Impact factor: 14.919

4.  Precision nomenclature for the new genomics.

Authors:  Harris A Lewin; Jennifer A Marshall Graves; Oliver A Ryder; Alexander S Graphodatsky; Stephen J O'Brien
Journal:  Gigascience       Date:  2019-08-01       Impact factor: 6.524

5.  Accurate Tracking of the Mutational Landscape of Diploid Hybrid Genomes.

Authors:  Lorenzo Tattini; Nicolò Tellini; Simone Mozzachiodi; Melania D'Angiolo; Sophie Loeillet; Alain Nicolas; Gianni Liti
Journal:  Mol Biol Evol       Date:  2019-12-01       Impact factor: 16.240

6.  Haploflow: Strain-resolved de novo assembly of viral genomes.

Authors:  A Fritz; A Bremges; Z-L Deng; T-R Lesker; J Götting; T Ganzenmüller; A Sczyrba; A Dilthey; F Klawonn; A C McHardy
Journal:  bioRxiv       Date:  2021-01-26

Review 7.  Bridging the Gap between Vertebrate Cytogenetics and Genomics with Single-Chromosome Sequencing (ChromSeq).

Authors:  Alessio Iannucci; Alexey I Makunin; Artem P Lisachov; Claudio Ciofi; Roscoe Stanyon; Marta Svartman; Vladimir A Trifonov
Journal:  Genes (Basel)       Date:  2021-01-19       Impact factor: 4.096

8.  HiFiAdapterFilt, a memory efficient read processing pipeline, prevents occurrence of adapter sequence in PacBio HiFi reads and their negative impacts on genome assembly.

Authors:  Sheina B Sim; Renee L Corpuz; Tyler J Simmonds; Scott M Geib
Journal:  BMC Genomics       Date:  2022-02-22       Impact factor: 3.969

9.  Widespread false gene gains caused by duplication errors in genome assemblies.

Authors:  Byung June Ko; Chul Lee; Juwan Kim; Arang Rhie; Dong Ahn Yoo; Kerstin Howe; Jonathan Wood; Seoae Cho; Samara Brown; Giulio Formenti; Erich D Jarvis; Heebal Kim
Journal:  Genome Biol       Date:  2022-09-27       Impact factor: 17.906

10.  The haplotype-resolved chromosome pairs of a heterozygous diploid African cassava cultivar reveal novel pan-genome and allele-specific transcriptome features.

Authors:  Weihong Qi; Yi-Wen Lim; Andrea Patrignani; Pascal Schläpfer; Anna Bratus-Neuenschwander; Simon Grüter; Christelle Chanez; Nathalie Rodde; Elisa Prat; Sonia Vautrin; Margaux-Alison Fustier; Diogo Pratas; Ralph Schlapbach; Wilhelm Gruissem
Journal:  Gigascience       Date:  2022-03-24       Impact factor: 6.524
  10 in total

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