| Literature DB >> 30514861 |
Mahdi Mahmoudi1, Amir Ashraf-Ganjouei1, Ali Javinani1, Farhad Shahram1, Akira Meguro2, Nobuhisa Mizuki3, Nooshin Ahmadzadeh1, Saeideh Jafarinejad-Farsangi1,4, Shayan Mostafaei1,5, Hoda Kavosi1, Seyedeh Tahereh Faezi6, Maassoumeh Akhlaghi1, Fereydoun Davatchi1.
Abstract
Behçet's Disease (BD) pathogenesis remains unclear, but some genetic loci and environmental factors are proposed to play a role. Here, we investigate the association of the endoplasmic reticulum aminopeptidase-1 (ERAP1) gene variants and HLA-B*51 with BD susceptibility and clinical manifestations in Iranian patients. In the study, 748 BD patients and 776 healthy individuals were included. The MGB-TaqMan Allelic Discrimination method was used to genotype 10 common missense single nucleotide polymorphisms (SNPs) and one intronic SNP in the ERAP1 gene region. We found no significant association between the 11 SNPs and BD in allelic and genotypic association tests. However, rs30187 showed the strongest association with BD in the recessive genotype model of the risk T allele in HLA-B*51 carriers. Although this became insignificant after correcting for multiple comparisons, the homozygous rs30187 risk allele genotype (TT) increased disease susceptibility in HLA-B*51 carriers in epistasis analysis, and the rs30187 TT recessive genotype showed a significant association with risk of cardiac involvement in the all patients and articular involvements in HLA-B*51 positive patients. Our findings suggest that gene-gene interactions between HLA-B*51 and ERAP1 variants is important for BD development, however, ERAP1 variants which interact with HLA-B*51 may differ among disease phenotypes or populations.Entities:
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Year: 2018 PMID: 30514861 PMCID: PMC6279803 DOI: 10.1038/s41598-018-35700-0
Source DB: PubMed Journal: Sci Rep ISSN: 2045-2322 Impact factor: 4.379
Allelic association tests of 11 ERAP1 SNPs.
| SNP | Position on Chr. 5 (GRCh38) | Alleles (1 > 2) | Amino acid changes | ALL | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Minor allele freq., % |
| OR (95% CI) | Minor allele freq., % |
| OR (95% CI) | ||||||
| Cases (N = 748) | Controls (N = 776) | Cases (N = 445) | Controls (N = 184) | ||||||||
| rs1065407 | 96,776,379 | T > G | Intronic | 36.6 | 32.5 | 0.018 | 1.20 (1.03–1.39) | 38.4 | 34.9 | 0.25 | 1.16 (0.90–1.50) |
| rs27044 | 96,783,148 | C > G | Glu730Gln | 28.5 | 29.1 | 0.74 | 0.97 (0.83–1.14) | 27.8 | 28.1 | 0.90 | 0.98 (0.75–1.29) |
| rs17482078 | 96,783,162 | C > T | Arg725Gln | 12.6 | 10.3 | 0.052 | 1.25 (1.00–1.56) | 13.6 | 12.0 | 0.43 | 1.16 (0.80–1.68) |
| rs10050860 | 96,786,506 | C > T | Asp575Asn | 12.5 | 10.1 | 0.039 | 1.27 (1.01–1.59) | 13.5 | 12.0 | 0.48 | 1.14 (0.79–1.65) |
| rs30187 | 96,788,627 | C > T | Arg528Lys | 40.1 | 39.7 | 0.82 | 1.02 (0.88–1.18) | 39.7 | 36.3 | 0.27 | 1.15 (0.90–1.48) |
| rs2287987 | 96,793,832 | T > C | Met349Val | 12.5 | 10.2 | 0.040 | 1.27 (1.01–1.59) | 13.5 | 12.3 | 0.57 | 1.11 (0.77–1.61) |
| rs27895 | 96,793,840 | C > T | Gly346Asp | 9.8 | 9.9 | 0.98 | 1.00 (0.79–1.26) | 10.4 | 9.0 | 0.45 | 1.18 (0.77–1.78) |
| rs26618 | 96,795,133 | T > C | Ile276Met | 20.1 | 22.9 | 0.059 | 0.85 (0.71–1.01) | 18.8 | 24.5 | 0.022 | 0.71 (0.53–0.95) |
| rs26653 | 96,803,547 | G > C | Pro127Arg | 40.2 | 39.7 | 0.75 | 1.02 (0.89–1.18) | 40.7 | 35.2 | 0.070 | 1.26 (0.98–1.63) |
| rs3734016 | 96,803,761 | C > T | Glu56Lys | 1.9 | 2.4 | 0.40 | 0.81 (0.50–1.32) | 2.1 | 1.6 | 0.57 | 1.31 (0.52–3.30) |
| rs72773968 | 96,803,892 | G > A | Thr12Ile | 9.8 | 9.9 | 0.88 | 0.98 (0.77–1.25) | 9.3 | 10.1 | 0.66 | 0.91 (0.61–1.37) |
1, major allele; 2, minor allele; OR, odds ratio; CI, confidence interval.
P < 0.00455 (0.05/11 SNPs) was considered significant after Bonferroni correction.
Genotypic association tests of 11 ERAP1 SNPs.
| SNP | Alleles (1 > 2) | Phenotype | Genotype ([2/2]/[1/2]/[1/1]) frequency, % | Dominant model ([2/2] + [1/2] vs. [1/1]) | Recessive model ([2/2] vs. [1/2] + [1/1]) | |||
|---|---|---|---|---|---|---|---|---|
| Cases | Controls |
| OR (95% CI) |
| OR (95% CI) | |||
| rs1065407 | T > G | ALL | 13.6/46.1/40.3 | 11.5/42.0/46.4 | 0.016 | 1.28 (1.05–1.57) | 0.23 | 1.21 (0.89–1.64) |
| 15.0/46.8/38.3 | 11.5/46.7/41.8 | 0.41 | 1.16 (0.81–1.64) | 0.26 | 1.35 (0.80–2.28) | |||
| rs27044 | C > G | ALL | 7.0/43.2/49.9 | 5.3/47.6/47.1 | 0.28 | 0.90 (0.73–1.09) | 0.18 | 1.34 (0.88–2.04) |
| 7.6/40.4/52.0 | 4.9/46.4/48.6 | 0.44 | 0.87 (0.62–1.23) | 0.23 | 1.59 (0.75–3.38) | |||
| rs17482078 | C > T | ALL | 2.8/19.5/77.7 | 1.0/18.6/80.4 | 0.19 | 1.18 (0.92–1.51) | 0.011 | 2.77 (1.22–6.29) |
| 4.2/18.8/77.0 | 2.2/19.6/78.3 | 0.73 | 1.07 (0.71–1.63) | 0.21 | 1.99 (0.67–5.94) | |||
| rs10050860 | C > T | ALL | 2.7/19.7/77.7 | 1.0/18.2/80.8 | 0.14 | 1.21 (0.94–1.55) | 0.017 | 2.63 (1.15–6.02) |
| 4.0/19.0/77.0 | 2.2/19.7/78.1 | 0.76 | 1.07 (0.71–1.61) | 0.25 | 1.87 (0.63–5.61) | |||
| rs30187 | C > T | ALL | 18.0/44.2/37.8 | 15.2/48.9/35.9 | 0.44 | 0.92 (0.75–1.13) | 0.15 | 1.22 (0.93–1.60) |
| 18.4/42.6/39.0 | 9.8/53.0/37.2 | 0.66 | 0.92 (0.65–1.32) | 0.0077 | 2.07 (1.20–3.55) | |||
| rs2287987 | T > C | ALL | 2.6/19.9/77.5 | 1.0/18.2/80.7 | 0.13 | 1.21 (0.95–1.56) | 0.024 | 2.52 (1.10–5.80) |
| 3.9/19.3/76.9 | 2.2/20.2/77.6 | 0.84 | 1.04 (0.69–1.57) | 0.29 | 1.79 (0.60–5.41) | |||
| rs27895 | C > T | ALL | 1.5/16.7/81.8 | 0.8/18.2/81.1 | 0.70 | 0.95 (0.73–1.23) | 0.20 | 1.92 (0.70–5.21) |
| 1.6/17.6/80.8 | 0.0/17.9/82.1 | 0.71 | 1.09 (0.70–1.69) | 0.088 | — | |||
| rs26618 | T > C | ALL | 4.4/31.4/64.2 | 5.3/35.3/59.4 | 0.056 | 0.82 (0.66–1.01) | 0.43 | 0.83 (0.52–1.32) |
| 3.8/29.9/66.3 | 5.4/38/56.5 | 0.020 | 0.66 (0.47–0.94) | 0.35 | 0.69 (0.31–1.53) | |||
| rs26653 | G > C | ALL | 16.2/48.1/35.7 | 15.2/48.9/35.9 | 0.94 | 1.01 (0.82–1.24) | 0.61 | 1.07 (0.82–1.42) |
| 16.1/49.3/34.6 | 8.7/53.0/38.3 | 0.38 | 1.17 (0.82–1.67) | 0.016 | 2.00 (1.13–3.54) | |||
| rs3734016 | C > T | ALL | 0.1/3.6/96.3 | 0.0/4.8/95.2 | 0.32 | 0.78 (0.47–1.28) | 0.31 | — |
| 0.2/3.8/96.0 | 0.0/3.3/96.7 | 0.65 | 1.24 (0.48–3.18) | 0.52 | — | |||
| rs72773968 | G > A | ALL | 1.1/17.4/81.6 | 0.5/18.8/80.7 | 0.66 | 0.94 (0.73–1.22) | 0.22 | 2.09 (0.63–6.96) |
| 1.3/15.8/82.8 | 0.0/20.1/79.9 | 0.39 | 0.82 (0.53–1.28) | 0.11 | — | |||
1, major allele; 2, minor allele; OR, odds ratio; CI, confidence interval.
P < 0.00455 (0.05/11 SNPs) was considered significant after Bonferroni correction.
Figure 1Linkage disequilibrium plot of 11 ERAP1 SNPs among 1,524 study participants. The r2 value corresponding to each SNP pair is expressed as a percentage and shown within the respective square. Shading represents the magnitude and significance of pairwise LD, with the white to black gradient reflecting lower to higher r2 values.
Two risk factor analysis between HLA-B*51 and the T allele of rs30187.
| Number of cases, n (%) | Number of controls, n (%) |
| OR (95% CI) | |
|---|---|---|---|---|
| −/− | 243 (32.8) | 492 (63.5) | — | 1.00 Reference |
| −/+ | 52 (7.0) | 100 (12.9) | 0.78 | 1.05 (0.73–1.52) |
| +/− | 364 (49.1) | 165 (21.3) | 4.01 × 10−36 | 4.47 (3.51–5.68) |
| +/+ | 82 (11.1) | 18 (2.3) | 4.64 × 10−21 | 9.22 (5.41–15.71) |
OR, odds ratio; CI, confidence interval.
*P < 0.0167 (0.05/3 groups with one or more risk factors) was considered significant after Bonferroni correction.
Recessive effects of the T allele of rs30187 on clinical symptoms of Behçet’s Disease.
| Phenotype | ALL | |||||
|---|---|---|---|---|---|---|
| Prevalence of phenotype, % | Recessive model (TT vs. CT + CC) | Prevalence of phenotype, % | Recessive model (TT vs. CT+CC) | |||
|
| OR (95% CI) |
| OR (95% CI) | |||
| Oral aphthosis | 98.39 | 0.16 | 1.22 (0.93–1.60) | 98.88 | 0.0064 | 2.10 (1.22–3.61) |
| Genital aphthosis | 62.82 | 0.14 | 1.26 (0.93–1.71) | 66.22 | 0.0093 | 2.10 (1.19–3.71) |
| Pseudofolliculitis | 48.72 | 0.082 | 1.33 (0.96–1.85) | 49.44 | 0.0049 | 2.29 (1.27–4.13) |
| Erythema nodosum | 28.05 | 0.48 | 1.16 (0.77–1.74) | 30.65 | 0.029 | 2.05 (1.07–3.93) |
| Ophthalmological involvement | 66.58 | 0.89 | 0.98 (0.71–1.34) | 66.00 | 0.057 | 1.74 (0.98–3.11) |
| Arthritis | 51.41 | 0.033 | 1.41 (1.03–1.94) | 51.01 | 0.0013 | 2.54 (1.42–4.53) |
| Vascular involvement | 11.14 | 0.92 | 1.03 (0.55–1.93) | 11.41 | 0.24 | 1.71 (0.69–4.19) |
| Neurologic involvement | 4.83 | 0.49 | 1.34 (0.58–3.14) | 5.15 | 0.088 | 2.55 (0.84–7.68) |
| Epididymitis | 3.22 | 0.47 | 1.45 (0.53–4.01) | 3.58 | 0.067 | 3.18 (0.88–11.57) |
| Gastrointestinal involvement | 3.22 | 0.71 | 0.80 (0.23–2.71) | 2.46 | 0.94 | 0.92 (0.11–7.58) |
| Cardiac involvement | 0.81 | 0.00055 | 11.14 (2.02–61.49) | 0.45 | 0.063 | 9.17 (0.55–152.90) |
| Positive pathergy test | 45.10 | 0.085 | 1.34 (0.96–1.87) | 52.35 | 0.010 | 2.13 (1.19–3.84) |
OR, odds ratio; CI, confidence interval.
The frequencies of signs were calculated among patients. Ophthalmological manifestation consists of anterior uveitis, posterior uveitis and retinal vasculitis. Note that epididymitis was calculated in the male population of the patients. P < 0.00417 (0.05/12 phenotypes) was considered significant after Bonferroni correction.