Literature DB >> 30511274

An exploratory data analysis method for identifying brain regions and frequencies of interest from large-scale neural recordings.

Macauley S Breault1, Pierre Sacré2, Jorge González-Martínez3, John T Gale4, Sridevi V Sarma2.   

Abstract

High-resolution whole brain recordings have the potential to uncover unknown functionality but also present the challenge of how to find such associations between brain and behavior when presented with a large number of regions and spectral frequencies. In this paper, we propose an exploratory data analysis method that sorts through a massive quantity of multivariate neural recordings to quickly extract a subset of brain regions and frequencies that encode behavior. This approach combines existing tools and exploits low-rank approximation of matrices without a priori selection of regions and frequency bands for analysis. In detail, the spectral content of neural activity across all frequencies of each recording contact is computed and represented as a matrix. Then, the rank-1 approximation of the matrix is computed using singular value decomposition and the associated singular vectors are extracted. The temporal singular vector, which captures the salient features of the spectrogram, is then correlated to the trial-varying behavioral signal. The distribution of correlations for each brain region is efficiently computed and used to find a subset of regions and frequency bands of interest for further examination. As an illustration, we apply this approach to a data set of local field potentials collected using stereoelectroencephalography from a human subject performing a reaching task. Using the proposed procedure, we produced a comprehensive set of brain regions and frequencies related to our specific behavior. We demonstrate how this tool can produce preliminary results that capture neural patterns related to behavior and aid in formulating data-driven hypotheses, hence reducing the time it takes for any scientist to transition from the exploratory to the confirmatory phase.

Entities:  

Keywords:  Exploratory data analysis; Multivariate neural data; Singular value decomposition; Stereoelectroencephalography

Mesh:

Year:  2018        PMID: 30511274     DOI: 10.1007/s10827-018-0705-9

Source DB:  PubMed          Journal:  J Comput Neurosci        ISSN: 0929-5313            Impact factor:   1.621


  28 in total

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Review 3.  Dimensionality reduction for large-scale neural recordings.

Authors:  John P Cunningham; Byron M Yu
Journal:  Nat Neurosci       Date:  2014-08-24       Impact factor: 24.884

4.  Comparison of spectral analysis methods for characterizing brain oscillations.

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Journal:  J Neurosci Methods       Date:  2006-12-20       Impact factor: 2.390

5.  PMv Neuronal Firing May Be Driven by a Movement Command Trajectory within Multidimensional Gaussian Fields.

Authors:  Rahul Agarwal; Nitish V Thakor; Sridevi V Sarma; Steve G Massaquoi
Journal:  J Neurosci       Date:  2015-06-24       Impact factor: 6.167

6.  High-performance execution of psychophysical tasks with complex visual stimuli in MATLAB.

Authors:  Wael F Asaad; Navaneethan Santhanam; Steven McClellan; David J Freedman
Journal:  J Neurophysiol       Date:  2012-10-03       Impact factor: 2.714

7.  An input-output linear time invariant model captures neuronal firing responses to external and behavioral events.

Authors:  Raina D'Aleo; Adam Rouse; Marc Schieber; Sridevi V Sarma
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2017-07

8.  Functional mapping of human sensorimotor cortex with electrocorticographic spectral analysis. II. Event-related synchronization in the gamma band.

Authors:  N E Crone; D L Miglioretti; B Gordon; R P Lesser
Journal:  Brain       Date:  1998-12       Impact factor: 13.501

9.  Functional mapping of human sensorimotor cortex with electrocorticographic spectral analysis. I. Alpha and beta event-related desynchronization.

Authors:  N E Crone; D L Miglioretti; B Gordon; J M Sieracki; M T Wilson; S Uematsu; R P Lesser
Journal:  Brain       Date:  1998-12       Impact factor: 13.501

10.  Lucky Rhythms in Orbitofrontal Cortex Bias Gambling Decisions in Humans.

Authors:  Pierre Sacré; Matthew S D Kerr; Kevin Kahn; Jorge Gonzalez-Martinez; Juan Bulacio; Hyun-Joo Park; Matthew A Johnson; Susan Thompson; Jaes Jones; Vikram S Chib; John T Gale; Sridevi V Sarma
Journal:  Sci Rep       Date:  2016-11-10       Impact factor: 4.379

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  1 in total

1.  Emerging techniques in statistical analysis of neural data.

Authors:  Sridevi V Sarma
Journal:  J Comput Neurosci       Date:  2019-02       Impact factor: 1.621

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