Literature DB >> 30510193

Ligand binding to human prostaglandin E receptor EP4 at the lipid-bilayer interface.

Yosuke Toyoda1,2, Kazushi Morimoto1, Ryoji Suno1, Shoichiro Horita1, Keitaro Yamashita3, Kunio Hirata3, Yusuke Sekiguchi1, Satoshi Yasuda4,5, Mitsunori Shiroishi6,7, Tomoko Shimizu8, Yuji Urushibata8, Yuta Kajiwara9,10, Tomoaki Inazumi11, Yunhon Hotta1, Hidetsugu Asada1,12, Takanori Nakane1, Yuki Shiimura1,12, Tomoya Nakagita1, Kyoshiro Tsuge11, Suguru Yoshida13, Tomoko Kuribara13, Takamitsu Hosoya7,13, Yukihiko Sugimoto11,14, Norimichi Nomura1,12, Miwa Sato15, Takatsugu Hirokawa7,10,16, Masahiro Kinoshita5, Takeshi Murata4,7, Kiyoshi Takayama8, Masaki Yamamoto3,7, Shuh Narumiya17,18, So Iwata19,20,21, Takuya Kobayashi22,23,24,25.   

Abstract

Prostaglandin E receptor EP4, a G-protein-coupled receptor, is involved in disorders such as cancer and autoimmune disease. Here, we report the crystal structure of human EP4 in complex with its antagonist ONO-AE3-208 and an inhibitory antibody at 3.2 Å resolution. The structure reveals that the extracellular surface is occluded by the extracellular loops and that the antagonist lies at the interface with the lipid bilayer, proximal to the highly conserved Arg316 residue in the seventh transmembrane domain. Functional and docking studies demonstrate that the natural agonist PGE2 binds in a similar manner. This structural information also provides insight into the ligand entry pathway from the membrane bilayer to the EP4 binding pocket. Furthermore, the structure reveals that the antibody allosterically affects the ligand binding of EP4. These results should facilitate the design of new therapeutic drugs targeting both orthosteric and allosteric sites in this receptor family.

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Year:  2018        PMID: 30510193     DOI: 10.1038/s41589-018-0131-3

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   15.040


  31 in total

Review 1.  Theoretical identification of thermostabilizing amino acid mutations for G-protein-coupled receptors.

Authors:  Takeshi Murata; Satoshi Yasuda; Tomohiko Hayashi; Masahiro Kinoshita
Journal:  Biophys Rev       Date:  2020-04-08

Review 2.  Harnessing Ion-Binding Sites for GPCR Pharmacology.

Authors:  Barbara Zarzycka; Saheem A Zaidi; Bryan L Roth; Vsevolod Katritch
Journal:  Pharmacol Rev       Date:  2019-10       Impact factor: 25.468

3.  Structural insights into ligand recognition and activation of the melanocortin-4 receptor.

Authors:  Huibing Zhang; Li-Nan Chen; Dehua Yang; Chunyou Mao; Qingya Shen; Wenbo Feng; Dan-Dan Shen; Antao Dai; Shanshan Xie; Yan Zhou; Jiao Qin; Jin-Peng Sun; Daniel H Scharf; Tingjun Hou; Tianhua Zhou; Ming-Wei Wang; Yan Zhang
Journal:  Cell Res       Date:  2021-08-25       Impact factor: 25.617

Review 4.  Universal platform for the generation of thermostabilized GPCRs that crystallize in LCP.

Authors:  Jendrik Schöppe; Janosch Ehrenmann; Yann Waltenspühl; Andreas Plückthun
Journal:  Nat Protoc       Date:  2022-02-09       Impact factor: 13.491

5.  Cryo-EM structure of the human MT1-Gi signaling complex.

Authors:  Hiroyuki H Okamoto; Hirotake Miyauchi; Asuka Inoue; Francesco Raimondi; Hirokazu Tsujimoto; Tsukasa Kusakizako; Wataru Shihoya; Keitaro Yamashita; Ryoji Suno; Norimichi Nomura; Takuya Kobayashi; So Iwata; Tomohiro Nishizawa; Osamu Nureki
Journal:  Nat Struct Mol Biol       Date:  2021-08-05       Impact factor: 15.369

6.  International Union of Basic and Clinical Pharmacology. CIX. Differences and Similarities between Human and Rodent Prostaglandin E2 Receptors (EP1-4) and Prostacyclin Receptor (IP): Specific Roles in Pathophysiologic Conditions.

Authors:  Xavier Norel; Yukihiko Sugimoto; Gulsev Ozen; Heba Abdelazeem; Yasmine Amgoud; Amel Bouhadoun; Wesam Bassiouni; Marie Goepp; Salma Mani; Hasanga D Manikpurage; Amira Senbel; Dan Longrois; Akos Heinemann; Chengcan Yao; Lucie H Clapp
Journal:  Pharmacol Rev       Date:  2020-10       Impact factor: 25.468

7.  E-type prostanoid receptor 4 drives resolution of intestinal inflammation by blocking epithelial necroptosis.

Authors:  Jay V Patankar; Tanja M Müller; Srinivas Kantham; Miguel Gonzalez Acera; Fabrizio Mascia; Kristina Scheibe; Mousumi Mahapatro; Christina Heichler; Yuqiang Yu; Wei Li; Barbara Ruder; Claudia Günther; Moritz Leppkes; Mano J Mathew; Stefan Wirtz; Clemens Neufert; Anja A Kühl; Jay Paquette; Kevan Jacobson; Raja Atreya; Sebastian Zundler; Markus F Neurath; Robert N Young; Christoph Becker
Journal:  Nat Cell Biol       Date:  2021-07-08       Impact factor: 28.824

Review 8.  Structural insights into melatonin receptors.

Authors:  Benjamin Stauch; Linda C Johansson; Vadim Cherezov
Journal:  FEBS J       Date:  2019-11-23       Impact factor: 5.542

9.  Endogenous agonist-bound S1PR3 structure reveals determinants of G protein-subtype bias.

Authors:  Shintaro Maeda; Yuki Shiimura; Hidetsugu Asada; Kunio Hirata; Fangjia Luo; Eriko Nango; Nobuo Tanaka; Masayasu Toyomoto; Asuka Inoue; Junken Aoki; So Iwata; Masatoshi Hagiwara
Journal:  Sci Adv       Date:  2021-06-09       Impact factor: 14.136

10.  Molecular basis for lipid recognition by the prostaglandin D2 receptor CRTH2.

Authors:  Heng Liu; R N V Krishna Deepak; Anna Shiriaeva; Cornelius Gati; Alexander Batyuk; Hao Hu; Uwe Weierstall; Wei Liu; Lei Wang; Vadim Cherezov; Hao Fan; Cheng Zhang
Journal:  Proc Natl Acad Sci U S A       Date:  2021-08-10       Impact factor: 11.205

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