Literature DB >> 30496034

Workshop Report: Zebrafish and Other Fish Models-Description of Extrinsic Environmental Factors for Rigorous Experiments and Reproducible Results.

Zoltan M Varga1, Stephen C Ekker2, Christian Lawrence3.   

Abstract

Current standards for husbandry and maintenance of zebrafish and other aquatic species in the laboratory are diverse, and are subject to laboratory performance, engineering, and practice standards (the Guide), institutional interpretation, national animal welfare laws, and cultural differences. Consequently, it is difficult, and probably not advantageous, to establish a single standard in view of the hardy nature of zebrafish and the diversity of research requirements it is used to address. Based on their natural habitat, zebrafish can thrive in a variety of environmental conditions, which is a specific advantage for working with this laboratory organism. However, it also makes reporting and reproducibility difficult, because variations in the husbandry and environmental conditions, including the environmental conditions before and during experiments, are often underreported in the scientific literature. This lack of consistency presents a potential problem for research reproducibility. To begin addressing this emerging scientific gap, the National Institutes of Health's (NIH) Office of Research Infrastructure Programs (ORIP), Division of Construction and Instruments (DCI), hosted a workshop in late 2017, entitled "Zebrafish and Other Aquatic Models: Reporting of Environmental Husbandry Conditions for Rigorous Experiments and Reproducible Results," that was attended by ∼60 participants. The objectives of the workshop were to bring together a diverse group of stakeholders-researchers, facility managers, veterinarians, journal editors, commercial vendors, and others to (1) review current husbandry and environmental management practices for the care of zebrafish and other aquatic organisms in the laboratory and to (2) propose a process for the development of a minimal set of environmental parameters that should be reported in publications to ensure rigor and robustness of experiments and reproducible outcomes. The participants also discussed how these recommendations, as an initial step, might be collected, disseminated, implemented, and improved upon after future iteration.

Entities:  

Keywords:  harmonizaton; housing environment; husbandry; reporting; reproducibility; scientific rigor

Mesh:

Year:  2018        PMID: 30496034      PMCID: PMC7645980          DOI: 10.1089/zeb.2018.29006.zol

Source DB:  PubMed          Journal:  Zebrafish        ISSN: 1545-8547            Impact factor:   1.985


  8 in total

1.  The common neural parasite Pseudoloma neurophilia causes altered shoaling behaviour in adult laboratory zebrafish (Danio rerio) and its implications for neurobehavioural research.

Authors:  S Spagnoli; J Sanders; M L Kent
Journal:  J Fish Dis       Date:  2016-07-11       Impact factor: 2.767

2.  Effects of the Dietary ω3:ω6 Fatty Acid Ratio on Body Fat and Inflammation in Zebrafish (Danio rerio).

Authors:  Mickie L Powell; Melissa A Pegues; Alexander J Szalai; Vithal K Ghanta; Louis R D'Abramo; Stephen A Watts
Journal:  Comp Med       Date:  2015-08       Impact factor: 0.982

3.  Reproducibility: Research-reporting standards fall short.

Authors:  David Baker; Katie Lidster; Ana Sottomayor; Sandra Amor
Journal:  Nature       Date:  2012-12-06       Impact factor: 49.962

4.  Opinion: Is science really facing a reproducibility crisis, and do we need it to?

Authors:  Daniele Fanelli
Journal:  Proc Natl Acad Sci U S A       Date:  2018-03-13       Impact factor: 11.205

5.  Gill membrane remodeling with soft-water acclimation in zebrafish (Danio rerio).

Authors:  Paul M Craig; Chris M Wood; Grant B McClelland
Journal:  Physiol Genomics       Date:  2007-02-13       Impact factor: 3.107

6.  Fluorescent light exposure incites acute and prolonged immune responses in zebrafish (Danio rerio) skin.

Authors:  Trevor J Gonzalez; Yuan Lu; Mikki Boswell; William Boswell; Geraldo Medrano; Sean Walter; Samuel Ellis; Markita Savage; Zoltan M Varga; Christian Lawrence; George Sanders; Ronald B Walter
Journal:  Comp Biochem Physiol C Toxicol Pharmacol       Date:  2017-09-29       Impact factor: 3.228

7.  Temperature regulates transcription in the zebrafish circadian clock.

Authors:  Kajori Lahiri; Daniela Vallone; Srinivas Babu Gondi; Cristina Santoriello; Thomas Dickmeis; Nicholas S Foulkes
Journal:  PLoS Biol       Date:  2005-09-27       Impact factor: 8.029

8.  Two years later: journals are not yet enforcing the ARRIVE guidelines on reporting standards for pre-clinical animal studies.

Authors:  David Baker; Katie Lidster; Ana Sottomayor; Sandra Amor
Journal:  PLoS Biol       Date:  2014-01-07       Impact factor: 8.029

  8 in total
  6 in total

Review 1.  Use of Zebrafish in Drug Discovery Toxicology.

Authors:  Steven Cassar; Isaac Adatto; Jennifer L Freeman; Joshua T Gamse; Iñaki Iturria; Christian Lawrence; Arantza Muriana; Randall T Peterson; Steven Van Cruchten; Leonard I Zon
Journal:  Chem Res Toxicol       Date:  2019-11-16       Impact factor: 3.739

2.  The Laboratory Domestication of Zebrafish: From Diverse Populations to Inbred Substrains.

Authors:  Jaanus Suurväli; Andrew R Whiteley; Yichen Zheng; Karim Gharbi; Maria Leptin; Thomas Wiehe
Journal:  Mol Biol Evol       Date:  2020-04-01       Impact factor: 16.240

3.  Effects of chronic prazosin, an alpha-1 adrenergic antagonist, on anxiety-like behavior and cortisol levels in a chronic unpredictable stress model in zebrafish (Danio rerio).

Authors:  Michael P O'Daniel; Maureen L Petrunich-Rutherford
Journal:  PeerJ       Date:  2020-01-31       Impact factor: 2.984

4.  Limits of temperature adaptation and thermopreferendum.

Authors:  K B Aslanidi; D P Kharakoz
Journal:  Cell Biosci       Date:  2021-04-06       Impact factor: 7.133

5.  Plasma proteome responses in zebrafish following λ-carrageenan-Induced inflammation are mediated by PMN leukocytes and correlate highly with their human counterparts.

Authors:  Ives Charlie-Silva; Natália M Feitosa; Leticia G Pontes; Bianca H Fernandes; Rafael H Nóbrega; Juliana M M Gomes; Mariana N L Prata; Fausto K Ferraris; Daniela C Melo; Gabriel Conde; Letícia F Rodrigues; Mayumi F Aracati; José D Corrêa-Junior; Wilson G Manrique; Joshua Superio; Aguinaldo S Garcez; Katia Conceição; Tania M Yoshimura; Silvia C Núñez; Silas F Eto; Dayanne C Fernandes; Anderson Z Freitas; Martha S Ribeiro; Artem Nedoluzhko; Mônica Lopes-Ferreira; Ricardo C Borra; Leonardo J G Barcellos; Andrea C Perez; Guilheme Malafaia; Thiago M Cunha; Marco A A Belo; Jorge Galindo-Villegas
Journal:  Front Immunol       Date:  2022-09-29       Impact factor: 8.786

6.  Standardized Reference Diets for Zebrafish: Addressing Nutritional Control in Experimental Methodology.

Authors:  Stephen A Watts; Louis R D'Abramo
Journal:  Annu Rev Nutr       Date:  2021-07-16       Impact factor: 11.848

  6 in total

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