Literature DB >> 30486530

[DNA barcoding identification of Dendrobium huoshanense and its adulterants].

Hui Wang1, Ling-Ling Shi1, Jue Zhou2, Guo-Ping Zhu1.   

Abstract

This research preliminarily discusses the relations of Dendrobium system growth through chloroplast gene rbcL, matK and the nuclear genome ITS2. The DNA barcoding universal sequence for authentication of the Dendrobium medical plants was slected and the possibility concerning utilizing the DNA barcoding to distinguish the D. huoshanenseand its adulterants was analyzed. Using the universal primer pair of ITS2, rbcL and matK, series of extended sequencing in the Dendrobium were conducted. Meanwhile, considering the different index about amplification and sequencing success rate of each sequence, the intraspecific and interspecific aberrance, the employment of BioEdit and MEGA 5.0 software were applied to establish the systematic tree of the NJ molecular and evaluate the diversified authentication capability of various sequences. The consequence demonstrates that the sequence of ITS2 is not only the largest one both in the intraspecific and interspecific aberrance of the Dendrobium but also has obvious barcoding gap. Considering the few overlap between the intraspecific and interspecific aberrance and the highest percentage regarding the formation of unilateral branch in diverse Dendrobium which have different ITS2 sequences, it can differentiate the species of Dendrobium. Furthermore, due to the inferior success rate of the rbcL and thematK and the lower reliability of NJ systematic tree, the percentage of the unilateral species which are generated by the systematic tree of rbcL and matK sequences is deficient. Therefore, the sequence of ITS2 can serves as DNA barcoding to distinguish the D. huoshanense, the D. moniliform and the D. officinale. Copyright© by the Chinese Pharmaceutical Association.

Entities:  

Keywords:  DNA barcoding ; Dendrobium ; ITS2 ; matK ; rbcL

Mesh:

Substances:

Year:  2018        PMID: 30486530     DOI: 10.19540/j.cnki.cjcmm.2018.0107

Source DB:  PubMed          Journal:  Zhongguo Zhong Yao Za Zhi        ISSN: 1001-5302


  1 in total

1.  Molecular Identification and Evaluation of the Genetic Diversity of Dendrobium Species Collected in Southern Vietnam.

Authors:  Nhu-Hoa Nguyen; Huyen-Trang Vu; Ngoc-Diep Le; Thanh-Diem Nguyen; Hoa-Xo Duong; Hoang-Dung Tran
Journal:  Biology (Basel)       Date:  2020-04-10
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.