Literature DB >> 30483924

Semi-sparse PCA.

Lars Eldén1, Nickolay Trendafilov2.   

Abstract

It is well known that the classical exploratory factor analysis (EFA) of data with more observations than variables has several types of indeterminacy. We study the factor indeterminacy and show some new aspects of this problem by considering EFA as a specific data matrix decomposition. We adopt a new approach to the EFA estimation and achieve a new characterization of the factor indeterminacy problem. A new alternative model is proposed, which gives determinate factors and can be seen as a semi-sparse principal component analysis (PCA). An alternating algorithm is developed, where in each step a Procrustes problem is solved. It is demonstrated that the new model/algorithm can act as a specific sparse PCA and as a low-rank-plus-sparse matrix decomposition. Numerical examples with several large data sets illustrate the versatility of the new model, and the performance and behaviour of its algorithmic implementation.

Entities:  

Keywords:  Stiefel manifold; alternative factor analysis; least squares; matrix decompositions; robust PCA; sparse PCA

Mesh:

Year:  2018        PMID: 30483924     DOI: 10.1007/s11336-018-9650-9

Source DB:  PubMed          Journal:  Psychometrika        ISSN: 0033-3123            Impact factor:   2.500


  3 in total

1.  A penalized matrix decomposition, with applications to sparse principal components and canonical correlation analysis.

Authors:  Daniela M Witten; Robert Tibshirani; Trevor Hastie
Journal:  Biostatistics       Date:  2009-04-17       Impact factor: 5.899

2.  Sparse Exploratory Factor Analysis.

Authors:  Nickolay T Trendafilov; Sara Fontanella; Kohei Adachi
Journal:  Psychometrika       Date:  2017-07-13       Impact factor: 2.500

3.  MLL translocations specify a distinct gene expression profile that distinguishes a unique leukemia.

Authors:  Scott A Armstrong; Jane E Staunton; Lewis B Silverman; Rob Pieters; Monique L den Boer; Mark D Minden; Stephen E Sallan; Eric S Lander; Todd R Golub; Stanley J Korsmeyer
Journal:  Nat Genet       Date:  2001-12-03       Impact factor: 38.330

  3 in total

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