| Literature DB >> 30483168 |
Sheng Wei1,2, Peng Sun1, Yinghui Guo1, Jingxuan Chen1,2, Jieqiong Wang1, Chunhong Song1, Zifa Li2, Ling Xue1, Mingqi Qiao1.
Abstract
Objective: To explore the targets, signal regulatory networks and mechanisms involved in Baixiangdan (BXD) capsule regulation of premenstrual dysphoric disorder (PMDD) at the gene transcription level, since the etiology and pathogenesis of PMDD are not well understood.Entities:
Keywords: Baixiangdan; KEGG; differentially expressed genes; gene chip; gene ontology; premenstrual dysphoric disorder; signal pathways; traditional Chinese medicine
Year: 2018 PMID: 30483168 PMCID: PMC6242977 DOI: 10.3389/fpsyg.2018.02065
Source DB: PubMed Journal: Front Psychol ISSN: 1664-1078
Primers used in RT-qPCR.
| Gene name | Used as | Sequences | Tm |
|---|---|---|---|
| Htr2c | Forward | 5′-TTCTTCATCCCGTTGACGATT-3′ | 54.3°C |
| Htr2c | Reverse | 5′-TCGGTGTGACCTCGAAGTAAC-3′ | 57.8°C |
| Htr2c | Probe | 5′-CGATCTACGTCCTGCGCCGTC-3′ | 63.3°C |
| Cdh3 | Forward | 5′-GACAGTGACCGATCTGGATTCC-3′ | 57.2°C |
| Cdh3 | Reverse | 5′-GGTGAAATGATCCCCATCGT-3′ | 54.9°C |
| Cdh3 | Probe | 5′-CCAACTCACCGGCATGGCGTG-3′ | 63.7°C |
| Serpinb1a | Forward | 5′-TGGGTGTGGTGGACAGCAT-3′ | 59.5°C |
| Serpinb1a | Reverse | 5′-CTCCCACATCCCCTTGAAGTAG-3′ | 56.9°C |
| Serpinb1a | Probe | 5′-ACCAAACTTGTGCTGGTGAACGCCA-3′ | 63.5°C |
| Ace | Forward | 5′-GGGAGAACATTTACGACATGGTAGT-3′ | 56.5°C |
| Ace | Reverse | 5′-TCCAGCCCTTCTGTACCATTG-3′ | 58.3°C |
| Ace | Probe | 5′-CCCGGACAAACCCAACCTCGATGT-3′ | 63.3°C |
| Trpv4 | Forward | 5′-ATCCGACGGGAGGTGACA-3′ | 58.4°C |
| Trpv4 | Reverse | 5′-CGTAGGCCCAGTCCTTGAAC-3′ | 57.8°C |
| Trpv4 | Probe | 5′-AGGACACACGGCACCTGTCTCGC-3′ | 65.5°C |
| Cacna1a | Forward | 5′-GGCATGGTGTTCTCCATCTACTT-3′ | 56.8°C |
| Cacna1a | Reverse | 5′-CCGCGATAGCTAAGAACACGT-3′ | 57.3°C |
| Cacna1a | Probe | 5′-CGTCCTCACCCTCTTCGGGAACTACAC-3′ | 63.5°C |
| Mapk8 | Forward | 5′-CCGTACATCAACGTCTGGTATGAT-3′ | 56.5°C |
| Mapk8 | Reverse | 5′-CTCCCTTTCATCTAACTGCTTGTC-3′ | 56.7°C |
| Mapk8 | Probe | 5′-TCAGAAGCAGAGGCCCCACCACC-3′ | 65.4°C |
| Mapk13 | Forward | 5′- GGCGGCCAAATCCTACAT-3′ | 55.7°C |
| Mapk13 | Reverse | 5′-GGGAAAAGCTGTGTGAAATCCT-3′ | 55.6°C |
| Mapk13 | Probe | 5′-AGTCCCTGCCCCAGAGCCCCA-3′ | 67.9°C |
| Cyp2c13 | Forward | 5′-GACACCGCAGCCCCTCTAT-3′ | 59.5°C |
| Cyp2c13 | Reverse | 5′-TCTCTGAACCTCGTGGACCAT-3′ | 57.7°C |
| Cyp2c13 | Probe | 5′-AGGAGCCACATGCCCTACACAAATGC-3′ | 63.3°C |
| Htr1a | Forward | 5′-TGTTGCTCATGCTGGTTCTCTAC-3′ | 57.1°C |
| Htr1a | Reverse | 5′-CTGACAGTCTTGCGGATTCG-3′ | 55.9°C |
| Htr1a | Probe | 5′-CGCATCTTCAGAGCCGCACGCT-3′ | 64.5°C |
| GAPDH | Forward | 5′-ATCAACGGGAAACCCATCAC-3′ | 55.3°C |
| GAPDH | Reverse | 5′-GACATACTCAGCACCAGCATCAC-3′ | 57.8°C |
| GAPDH | Probe | 5′-TCCAGGAGCGAGATCCCGCTAACAT-3′ | 63.3°C |
FIGURE 1Results of behavioral experiments. (A) Total distance (mm) traversed by control group (CTRL, n = 8), premenstrual dysphoric disorder model group (PMDD, n = 9), fluoxetine administration group (FXT, n = 9) and Baixiangdan capsule administration group (BXD, n = 9) in open field test at baseline and after administration. (B) Composite aggression (CA) scores of non-aggressive rats (control group, CTRL, n = 8) and aggressive rats (PMDD, n = 27) in aggressive behavior test at baseline. Aggressive rats included those from the PMDD model group (n = 9), fluoxetine administration group (n = 9) and Baixiangdan capsule administration group (n = 9). None of the aggressive rats were given drugs at baseline, and therefore could be treated as equivalent to PMDD model rats for statistical purposes. ∗∗∗P < 0.001 vs. control group. (C) Composite aggression (CA) scores of the control group (CTRL, n = 8) in aggressive behavior test at baseline and after 5 days. As the control group was not given drugs, the time points labeled “after administration” were changed as “after 5 days.” (D) Composite aggression (CA) scores of PMDD model group (PMDD, n = 9), fluoxetine administration group (FXT, n = 9) and Baixiangdan capsule administration group (BXD, n = 9) in aggressive behavior test before and after drug administration. As there was no baseline testing of aggressive behavior test if rats were given drugs or tap water, the time points labeled “baseline” were changed to “Before administration” ∗∗∗P < 0.001 vs. PMDD model group.
Numbers of differentially expressed genes in each group.
| Groups | Acronyms | Up-regulated genes | Down-regulated genes | Comments |
|---|---|---|---|---|
| Control group | CTRL | N.A. | N.A. | N.A. |
| PMDD model group | PMDD | 132 | 5 | |
| Fluoxetine administration group | FXT | 112 | 87 | |
| BXD administration group | BXD | 284 | 431 | |
FIGURE 2Heat maps and clustering analyses of multiple comparisons. (A) Comparison between the PMDD model group (PMDD, samples including 15_11, 17_11 and 17_4) and fluoxetine administration group (FXT, samples including 24_14, 18_8 and 2_26). (B) Comparison between the PMDD model group (PMDD, samples including 15_11, 17_11 and 17_4) and Baixiangdan administration group (BXD, samples including 24_22, 14_21 and 4_4). (C) Comparison between the fluoxetine administration group (FXT, samples including 24_14, 18_8 and 2_26) and Baixiangdan administration group (BXD, samples including 24_22, 14_21 and 4_4). P < 0.05 and ratio > 2.0.
Functions of differentially expressed genes in each group.
| Groups | Acronyms | Molecular function | Biological process | Cellular component | Comments |
|---|---|---|---|---|---|
| Control group | CTRL | N.A. | N.A. | N.A. | N.A. |
| PMDD model group | PMDD | 15 | 111 | 8 | Ratio > 2.0 |
| Fluoxetine administration group | FXT | 26 | 146 | 5 | |
| BXD administration group | BXD | 34 | 186 | 25 | |
Regulated and associated signaling pathways in groups.
| Groups | Associated signaling pathways |
|---|---|
| PMDD vs. CTRL | Olfactory transduction; Calcium signaling pathway; Cell adhesion molecules; PI3K-Akt signaling pathway; Ovarian steroidogenesis; Jak-STAT signaling pathway; Neuroactive ligand-receptor interaction; Prolactin signaling; ECM-receptor interaction; Vitamin digestion and absorption |
| FXT vs. CTRL | Steroid hormone biosynthesis; Calcium signaling pathway; Serotonergic synapse; Vitamin digestion and absorption; Dopaminergic synapse; Neuroactive ligand-receptor interaction; GABAergic synapse; Gap junction; p53 signaling pathway; Cholinergic synapse |
| BXD vs. CTRL | Calcium signaling pathway; Serotonergic synapse; Glutamatergic synapse; Steroid hormone biosynthesis; Vascular smooth muscle contractio; Axon guidance; Neuroactive ligand-receptor interaction; Long-term potentiation; Adrenergic signaling in cardiomyocytes; Dopaminergic synapse |
Differentially expressed genes obviously affected by fluoxetine or Baixiangdan.
| Gene symbol | Gene ID | MvsC (FC) | FvsC (FC) | BvsC (FC) |
|---|---|---|---|---|
| Msx1 | NM_031059 | 3.54 | 1.03 | 1.23 |
| Cldn1 | NM_031699 | 4.67 | 1.64 | 1.49 |
| Pon3 | NM_001004086 | 4.73 | 1.54 | 2.24 |
| Crb3 | NM_001025661 | 4.08 | 1.28 | 2.04 |
| Slc5a5 | NM_052983 | 5.35 | 1.69 | 1.29 |
| Htr2c | NM_012765 | 4.72 | 1.68 | 2.31 |
| Cdh3 | NM_053938 | 5.66 | 1.47 | 1.30 |
| Serpinb1a | NM_001031642 | 3.71 | 2.23 | 1.44 |
| Ace | NM-012544 | 5.32 | 1.59 | 1.41 |
| Trpv4 | NM_023970 | 5.74 | 1.29 | 2.29 |
| Cyp2c23 | NM_031839 | -8.76 | -2.87 | -3.35 |
| Hp | NM_012582 | -18.45 | -3.36 | -4.55 |
| C5 | XM_345342 | -7.23 | -1.78 | -1.54 |
| Serpinc1 | NM_001012027 | -12.54 | -3.27 | -4.36 |
| Aldob | NM_012496 | -4.79 | -2.23 | -1.97 |
| Cacna1a | NM_012918 | -2.63 | -1.76 | -1.71 |
| Mapk13 | NM_019231 | -2.08 | -1.35 | -1.24 |
| Mapk8 | XM_341399 | -1.52 | -1.38 | -1.33 |
| Cyp2c13 | NM_138514 | -3.45 | -1.57 | -1.41 |
| Htr1a | NM_012585 | -2.33 | -1.17 | -1.75 |
Relative quantity (RQ) values of selected genes in each group.
| Gene name | Relative quantity (RQ) | |||
|---|---|---|---|---|
| CTRL | PMDD | FXT | BXD | |
| Htr2c | 1 | 4.72 | 3.16 | 3.11 |
| Cdh3 | 1 | 5.66 | 2.29 | 2.08 |
| Serpinb1a | 1 | 3.71 | 2.16 | 1.95 |
| Ace | 1 | 5.32 | 2.68 | 2.09 |
| Trpv4 | 1 | 5.74 | 1.88 | 1.78 |
| Cacna1a | 1 | 0.45 | 0.85 | 0.75 |
| Mapk8 | 1 | 0.66 | 0.7 | 0.9 |
| Mapk13 | 1 | 0.48 | 0.78 | 0.73 |
| Cyp2c13 | 1 | 0.29 | 0.57 | 0.63 |
| Htr1a | 1 | 0.43 | 0.89 | 0.72 |