Literature DB >> 30477347

Development of classification models for predicting chronic toxicity of chemicals to Daphnia magna and Pseudokirchneriella subcapitata.

F Ding1,2, Z Wang1, X Yang1,3, L Shi1, J Liu1, G Chen2.   

Abstract

Both the acute toxicity and chronic toxicity data on aquatic organisms are indispensable parameters in the ecological risk assessment priority chemical screening process (e.g. persistent, bioaccumulative and toxic chemicals). However, most of the present modelling actions are focused on developing predictive models for the acute toxicity of chemicals to aquatic organisms. As regards chronic aquatic toxicity, considerable work is needed. The major objective of the present study was to construct in silico models for predicting chronic toxicity data for Daphnia magna and Pseudokirchneriella subcapitata. In the modelling, a set of chronic toxicity data was collected for D. magna (21 days no observed effect concentration (NOEC)) and P. subcapitata (72 h NOEC), respectively. Then, binary classification models were developed for D. magna and P. subcapitata by employing the k-nearest neighbour method (k-NN). The model assessment results indicated that the obtained optimum models had high accuracy, sensitivity and specificity. The model application domain was characterized by the Euclidean distance-based method. In the future, the data gap for other chemicals within the application domain on their chronic toxicity for D. magna and P. subcapitata could be filled using the models developed here.

Entities:  

Keywords:  -nearest neighbour method; aquatic organisms; chronic toxicity; classification model

Mesh:

Substances:

Year:  2018        PMID: 30477347     DOI: 10.1080/1062936X.2018.1545694

Source DB:  PubMed          Journal:  SAR QSAR Environ Res        ISSN: 1026-776X            Impact factor:   3.000


  4 in total

1.  Comparison of seven in silico tools for evaluating of daphnia and fish acute toxicity: case study on Chinese Priority Controlled Chemicals and new chemicals.

Authors:  Linjun Zhou; Deling Fan; Wei Yin; Wen Gu; Zhen Wang; Jining Liu; Yanhua Xu; Lili Shi; Mingqing Liu; Guixiang Ji
Journal:  BMC Bioinformatics       Date:  2021-03-24       Impact factor: 3.169

2.  New Models to Predict the Acute and Chronic Toxicities of Representative Species of the Main Trophic Levels of Aquatic Environments.

Authors:  Cosimo Toma; Claudia I Cappelli; Alberto Manganaro; Anna Lombardo; Jürgen Arning; Emilio Benfenati
Journal:  Molecules       Date:  2021-11-19       Impact factor: 4.411

3.  Use of QSAR Global Models and Molecular Docking for Developing New Inhibitors of c-src Tyrosine Kinase.

Authors:  Robert Ancuceanu; Bogdan Tamba; Cristina Silvia Stoicescu; Mihaela Dinu
Journal:  Int J Mol Sci       Date:  2019-12-18       Impact factor: 5.923

4.  Defining the Human-Biota Thresholds of Toxicological Concern for Organic Chemicals in Freshwater: The Proposed Strategy of the LIFE VERMEER Project Using VEGA Tools.

Authors:  Diego Baderna; Roberta Faoro; Gianluca Selvestrel; Adrien Troise; Davide Luciani; Sandrine Andres; Emilio Benfenati
Journal:  Molecules       Date:  2021-03-30       Impact factor: 4.411

  4 in total

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