Literature DB >> 30476708

Molecular docking studies, charge transfer excitation and wave function analyses (ESP, ELF, LOL) on valacyclovir : A potential antiviral drug.

Fathima Rizwana B1, Johanan Christian Prasana1, S Muthu2, Christina Susan Abraham1.   

Abstract

Valacyclovir is the l-valyl ester prodrug of the antiviral drug acyclovir that exhibits activity against Herpes simplex virus types and varicella zoster virus. An explicit surface analysis on the title compound was carried out theoretically using the wavefunction analyser multiwfn software, inorder to study the reactivity of the compound. The input wavefunction files were generated by Gaussian 09W software using B3LYP/6-311++G(d,p) as the basis set. The structure of the title compound was optimized; wave function analyses and the molecular docking studies were completed. The UV spectrum was experimentally recorded in solvent phase and in addition to it the electronic absorption spectrum of the compound was evaluated by TD-DFT in the gas and solvent phase. The ESP (Electrostatic potential) map points out the surface extremas where the global surface minimum is seen at the oxygen atom with the value -61.5675 and global surface maximum near the hydrogen atom with the value 67.862. The energy band gap obtained from the HOMO-LUMO gap (E = 3.6023 eV) were found to be in agreement with the energy gap (E = 3.6174 eV) calculated using λmax from the UV spectrum. The electron-hole distribution of the molecule indicated a charge transfer within the molecule. Electron Localization Function, Local Orbital Localizer, Thermodynamic functions were discussed. The reactive sites of the compound were studied from the fukui function calculations and chemical descriptors define the reactivity of the molecule on the whole. The antiviral activities of the title compound against various viral proteins (VZV, HSV, Dengue) were studied using molecular docking.
Copyright © 2018 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Charge transfer; DFT; ELF; ESP; Molecular docking

Mesh:

Substances:

Year:  2018        PMID: 30476708     DOI: 10.1016/j.compbiolchem.2018.11.014

Source DB:  PubMed          Journal:  Comput Biol Chem        ISSN: 1476-9271            Impact factor:   2.877


  5 in total

1.  Molecular structure, NBO analysis of the hydrogen-bonded interactions, spectroscopic (FT-IR, FT-Raman), drug likeness and molecular docking of the novel anti COVID-2 molecule (2E)-N-methyl-2-[(4-oxo-4H-chromen-3-yl)methylidene]-hydrazinecarbothioamide (Dimer) - quantum chemical approach.

Authors:  S J Jenepha Mary; Sayantan Pradhan; C James
Journal:  Spectrochim Acta A Mol Biomol Spectrosc       Date:  2020-12-29       Impact factor: 4.098

2.  Synthesis, spectroscopic, topological, hirshfeld surface analysis, and anti-covid-19 molecular docking investigation of isopropyl 1-benzoyl-4-(benzoyloxy)-2,6-diphenyl-1,2,5,6-tetrahydropyridine-3-carboxylate.

Authors:  Arulraj Ramalingam; Murugavel Kuppusamy; Sivakumar Sambandam; Mouna Medimagh; Oluwatoba Emmanuel Oyeneyin; Amirthaganesan Shanmugasundaram; Noureddine Issaoui; Nathanael Damilare Ojo
Journal:  Heliyon       Date:  2022-10-02

3.  Speculative assessment, molecular composition, PDOS, topology exploration (ELF, LOL, RDG), ligand-protein interactions, on 5-bromo-3-nitropyridine-2-carbonitrile.

Authors:  K Arulaabaranam; S Muthu; G Mani; A S Ben Geoffrey
Journal:  Heliyon       Date:  2021-05-21

4.  Quantum mechanical, spectroscopic and docking studies of (2E)-1-(4-aminophenyl)-3-(4-benzyloxyphenyl)-prop-2-en-1-one Chalcone derivative by density functional theory - A prospective respiratory drug.

Authors:  T Hannah Clara; S Muthu; Johanan Christian Prasana
Journal:  Mater Today Proc       Date:  2020-11-05

5.  Vibrational spectroscopy, quantum computational and molecular docking studies on 2-chloroquinoline-3-carboxaldehyde.

Authors:  A Saral; P Sudha; S Muthu; S Sevvanthi; P Sangeetha; S Selvakumari
Journal:  Heliyon       Date:  2021-07-09
  5 in total

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