Literature DB >> 30472990

The Limits of Enzyme Specificity and the Evolution of Metabolism.

Alessio Peracchi1.   

Abstract

The substrate specificity of enzymes is bound to be imperfect, because of unavoidable physicochemical limits. In extant metabolic enzymes, furthermore, such limits are seldom approached, suggesting that the degree of specificity of these enzymes, on average, is much lower than could be attained. During biological evolution, the activity of a single enzyme with available alternative substrates may be preserved to a significant or even substantial level for different reasons - for example when the alternative reaction contributes to fitness, or when its undesirable products are nevertheless dispatched by metabolite repair enzymes. In turn, the widespread occurrence of promiscuous reactions is a consistent source of metabolic 'messiness', from which both liabilities and opportunities ensue in the evolution of metabolic systems.
Copyright © 2018 Elsevier Ltd. All rights reserved.

Keywords:  chemicophysical limits; metabolite repair enzymes; substrate promiscuity; substrate specificity; underground metabolism

Mesh:

Year:  2018        PMID: 30472990     DOI: 10.1016/j.tibs.2018.09.015

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  19 in total

1.  Substrate Promiscuity of a Paralytic Shellfish Toxin Amidinotransferase.

Authors:  April L Lukowski; Leena Mallik; Meagan E Hinze; Brian M Carlson; Duncan C Ellinwood; Joshua B Pyser; Markos Koutmos; Alison R H Narayan
Journal:  ACS Chem Biol       Date:  2020-02-14       Impact factor: 5.100

2.  Glycan processing in the Golgi as optimal information coding that constrains cisternal number and enzyme specificity.

Authors:  Alkesh Yadav; Quentin Vagne; Pierre Sens; Garud Iyengar; Madan Rao
Journal:  Elife       Date:  2022-02-17       Impact factor: 8.713

3.  Diffusion control in biochemical specificity.

Authors:  Jose L Alejo; Christopher P Kempes; Katarzyna P Adamala
Journal:  Biophys J       Date:  2022-03-09       Impact factor: 3.699

4.  The synthesis of branched-chain fatty acids is limited by enzymatic decarboxylation of ethyl- and methylmalonyl-CoA.

Authors:  Joseph P Dewulf; Isabelle Gerin; Mark H Rider; Maria Veiga-da-Cunha; Emile Van Schaftingen; Guido T Bommer
Journal:  Biochem J       Date:  2019-08-30       Impact factor: 3.857

Review 5.  Inborn errors of metabolite repair.

Authors:  Maria Veiga-da-Cunha; Emile Van Schaftingen; Guido T Bommer
Journal:  J Inherit Metab Dis       Date:  2019-12-29       Impact factor: 4.982

6.  Promiscuity and specificity of eukaryotic glycosyltransferases.

Authors:  Ansuman Biswas; Mukund Thattai
Journal:  Biochem Soc Trans       Date:  2020-06-30       Impact factor: 5.407

7.  GADL1 is a multifunctional decarboxylase with tissue-specific roles in β-alanine and carnosine production.

Authors:  Elaheh Mahootchi; Selina Cannon Homaei; Rune Kleppe; Ingeborg Winge; Tor-Arne Hegvik; Roberto Megias-Perez; Christian Totland; Floriana Mogavero; Anne Baumann; Jeffrey Colm Glennon; Hrvoje Miletic; Petri Kursula; Jan Haavik
Journal:  Sci Adv       Date:  2020-07-17       Impact factor: 14.136

Review 8.  Promiscuous Ribozymes and Their Proposed Role in Prebiotic Evolution.

Authors:  Evan Janzen; Celia Blanco; Huan Peng; Josh Kenchel; Irene A Chen
Journal:  Chem Rev       Date:  2020-02-03       Impact factor: 60.622

Review 9.  Mechanisms of promiscuity among drug metabolizing enzymes and drug transporters.

Authors:  William M Atkins
Journal:  FEBS J       Date:  2019-11-12       Impact factor: 5.542

10.  Data Processing Thresholds for Abundance and Sparsity and Missed Biological Insights in an Untargeted Chemical Analysis of Blood Specimens for Exposomics.

Authors:  Dinesh Kumar Barupal; Sadjad Fakouri Baygi; Robert O Wright; Manish Arora
Journal:  Front Public Health       Date:  2021-06-10
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