Literature DB >> 30467557

UArizona at the MADE1.0 NLP Challenge.

Dongfang Xu1, Vikas Yadav1, Steven Bethard1.   

Abstract

MADE1.0 is a public natural language processing challenge aiming to extract medication and adverse drug events from Electronic Health Records. This work presents NER and RI systems developed by UArizona team for the MADE1.0 competition. We propose a neural NER system for medical named entity recognition using both local and context features for each individual word and a simple but effective SVM-based pairwise relation classification system for identifying relations between medical entities and attributes. Our system achieves 81.56%, 83.18%, and 59.85% F1 score in the three tasks of MADE1.0 challenge, respectively, ranked amongst the top three teams for Task 2 and 3.

Entities:  

Keywords:  Adverse Drug Event; Information Extraction; Neural Network

Year:  2018        PMID: 30467557      PMCID: PMC6245580     

Source DB:  PubMed          Journal:  Proc Mach Learn Res


  6 in total

1.  Character-level neural network for biomedical named entity recognition.

Authors:  Mourad Gridach
Journal:  J Biomed Inform       Date:  2017-05-11       Impact factor: 6.317

2.  Burden of hospitalizations related to adverse drug events in the USA: a retrospective analysis from large inpatient database.

Authors:  Dilli Ram Poudel; Prakash Acharya; Sushil Ghimire; Rashmi Dhital; Rajani Bharati
Journal:  Pharmacoepidemiol Drug Saf       Date:  2017-02-24       Impact factor: 2.890

3.  Bidirectional RNN for Medical Event Detection in Electronic Health Records.

Authors:  Abhyuday N Jagannatha; Hong Yu
Journal:  Proc Conf       Date:  2016-06

4.  Structured prediction models for RNN based sequence labeling in clinical text.

Authors:  Abhyuday N Jagannatha; Hong Yu
Journal:  Proc Conf Empir Methods Nat Lang Process       Date:  2016-11

5.  Combining joint models for biomedical event extraction.

Authors:  David McClosky; Sebastian Riedel; Mihai Surdeanu; Andrew McCallum; Christopher D Manning
Journal:  BMC Bioinformatics       Date:  2012-06-26       Impact factor: 3.169

6.  ChemTok: A New Rule Based Tokenizer for Chemical Named Entity Recognition.

Authors:  Abbas Akkasi; Ekrem Varoğlu; Nazife Dimililer
Journal:  Biomed Res Int       Date:  2016-01-28       Impact factor: 3.411

  6 in total
  2 in total

1.  Deep learning approaches for extracting adverse events and indications of dietary supplements from clinical text.

Authors:  Yadan Fan; Sicheng Zhou; Yifan Li; Rui Zhang
Journal:  J Am Med Inform Assoc       Date:  2021-03-01       Impact factor: 4.497

2.  Adverse drug event presentation and tracking (ADEPT): semiautomated, high throughput pharmacovigilance using real-world data.

Authors:  Alon Geva; Jason P Stedman; Shannon F Manzi; Chen Lin; Guergana K Savova; Paul Avillach; Kenneth D Mandl
Journal:  JAMIA Open       Date:  2020-08-31
  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.