Literature DB >> 30465231

Whole genome engineering by synthesis.

Zhouqing Luo1, Qing Yang1,2, Binan Geng1,2, Shuangying Jiang1, Shihui Yang2, Xiaozheng Li3, Yizhi Cai1,4, Junbiao Dai5,6.   

Abstract

Whole genome engineering is now feasible with the aid of genome editing and synthesis tools. Synthesizing a genome from scratch allows modifications of the genomic structure and function to an extent that was hitherto not possible, which will finally lead to new insights into the basic principles of life and enable valuable applications. With several recent genome synthesis projects as examples, the technical details to synthesize a genome and applications of synthetic genome are addressed in this perspective. A series of ongoing or future synthetic genomics projects, including the different genomes to be synthesized in GP-write, synthetic minimal genome, massively recoded genome, chimeric genome and synthetic genome with expanded genetic alphabet, are also discussed here with a special focus on theoretical and technical impediments in the design and synthesis process. Synthetic genomics will become a commonplace to engineer pathways and genomes according to arbitrary sets of design principles with the development of high-efficient, low-cost genome synthesis and assembly technologies.

Keywords:  functional genomics; genome design; genome engineering; synthetic biology; synthetic genome

Mesh:

Year:  2018        PMID: 30465231     DOI: 10.1007/s11427-018-9403-y

Source DB:  PubMed          Journal:  Sci China Life Sci        ISSN: 1674-7305            Impact factor:   6.038


  5 in total

Review 1.  Genome-Editing Technologies: Concept, Pros, and Cons of Various Genome-Editing Techniques and Bioethical Concerns for Clinical Application.

Authors:  Sikandar Hayat Khan
Journal:  Mol Ther Nucleic Acids       Date:  2019-04-03

Review 2.  Robust Approaches for the Production of Active Ingredient and Drug Product for Human Phage Therapy.

Authors:  Michele Mutti; Lorenzo Corsini
Journal:  Front Microbiol       Date:  2019-10-08       Impact factor: 5.640

3.  Synthetic refactor of essential genes decodes functionally constrained sequences in yeast genome.

Authors:  Zhenzhen Liang; Zhouqing Luo; Weimin Zhang; Kang Yu; Hui Wang; Binan Geng; Qing Yang; Zuoyu Ni; Cheng Zeng; Yihui Zheng; Chunyuan Li; Shihui Yang; Yingxin Ma; Junbiao Dai
Journal:  iScience       Date:  2022-08-18

4.  Systematic dissection of key factors governing recombination outcomes by GCE-SCRaMbLE.

Authors:  Huiming Zhang; Xian Fu; Xuemei Gong; Yun Wang; Haolin Zhang; Yu Zhao; Yue Shen
Journal:  Nat Commun       Date:  2022-10-03       Impact factor: 17.694

5.  Compacting a synthetic yeast chromosome arm.

Authors:  Zhouqing Luo; Kang Yu; Shangqian Xie; Marco Monti; Daniel Schindler; Yuan Fang; Shijun Zhao; Zhenzhen Liang; Shuangying Jiang; Meiwei Luan; Chuanle Xiao; Yizhi Cai; Junbiao Dai
Journal:  Genome Biol       Date:  2021-01-04       Impact factor: 13.583

  5 in total

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