Literature DB >> 30465045

Repurposing Citizen Science Games as Software Tools for Professional Scientists.

Seth Cooper1, Amy L R Sterling2, Robert Kleffner3, William M Silversmith4, Justin B Siegel5.   

Abstract

Scientific software is often developed with professional scientists in mind, resulting in complex tools with a steep learning curve. Citizen science games, however, are designed for citizen scientists- members of the general public. These games maintain scientific accuracy while placing design goals such as usability and enjoyment at the forefront. In this paper, we identify an emerging use of game-based technology, in the repurposing of citizen science games to be software tools for professional scientists in their work. We discuss our experience in two such repurposings: Foldit, a protein folding and design game, and Eyewire, a web-based 3D neuron reconstruction game. Based on this experience, we provide evidence that the software artifacts produced for citizen science can be useful for professional scientists, and provide an overview of key design principles we found to be useful in the process of repurposing.

Entities:  

Keywords:  citizen science; design; games; repurposing

Year:  2018        PMID: 30465045      PMCID: PMC6241531          DOI: 10.1145/3235765.3235770

Source DB:  PubMed          Journal:  FDG


  27 in total

1.  UCSF Chimera--a visualization system for exploratory research and analysis.

Authors:  Eric F Pettersen; Thomas D Goddard; Conrad C Huang; Gregory S Couch; Daniel M Greenblatt; Elaine C Meng; Thomas E Ferrin
Journal:  J Comput Chem       Date:  2004-10       Impact factor: 3.376

2.  Accelerating molecular dynamic simulation on the cell processor and Playstation 3.

Authors:  Edgar Luttmann; Daniel L Ensign; Vishal Vaidyanathan; Mike Houston; Noam Rimon; Jeppe Øland; Guha Jayachandran; Mark Friedrichs; Vijay S Pande
Journal:  J Comput Chem       Date:  2009-01-30       Impact factor: 3.376

3.  RNA design rules from a massive open laboratory.

Authors:  Jeehyung Lee; Wipapat Kladwang; Minjae Lee; Daniel Cantu; Martin Azizyan; Hanjoo Kim; Alex Limpaecher; Sungroh Yoon; Adrien Treuille; Rhiju Das
Journal:  Proc Natl Acad Sci U S A       Date:  2014-01-27       Impact factor: 11.205

4.  Predicting protein structures with a multiplayer online game.

Authors:  Seth Cooper; Firas Khatib; Adrien Treuille; Janos Barbero; Jeehyung Lee; Michael Beenen; Andrew Leaver-Fay; David Baker; Zoran Popović; Foldit Players
Journal:  Nature       Date:  2010-08-05       Impact factor: 49.962

Review 5.  Sculpting proteins interactively: continual energy minimization embedded in a graphical modeling system.

Authors:  M C Surles; J S Richardson; D C Richardson; F P Brooks
Journal:  Protein Sci       Date:  1994-02       Impact factor: 6.725

6.  Improvement of a potential anthrax therapeutic by computational protein design.

Authors:  Sean J Wu; Christopher B Eiben; John H Carra; Ivan Huang; David Zong; Peixian Liu; Cindy T Wu; Jeff Nivala; Josef Dunbar; Tomas Huber; Jeffrey Senft; Rowena Schokman; Matthew D Smith; Jeremy H Mills; Arthur M Friedlander; David Baker; Justin B Siegel
Journal:  J Biol Chem       Date:  2011-07-18       Impact factor: 5.157

7.  Electron Microscopic Reconstruction of Functionally Identified Cells in a Neural Integrator.

Authors:  Ashwin Vishwanathan; Kayvon Daie; Alexandro D Ramirez; Jeff W Lichtman; Emre R F Aksay; H Sebastian Seung
Journal:  Curr Biol       Date:  2017-07-14       Impact factor: 10.900

8.  Space-time wiring specificity supports direction selectivity in the retina.

Authors:  Jinseop S Kim; Matthew J Greene; Aleksandar Zlateski; Kisuk Lee; Mark Richardson; Srinivas C Turaga; Michael Purcaro; Matthew Balkam; Amy Robinson; Bardia F Behabadi; Michael Campos; Winfried Denk; H Sebastian Seung
Journal:  Nature       Date:  2014-05-04       Impact factor: 49.962

9.  Lessons from Fraxinus, a crowd-sourced citizen science game in genomics.

Authors:  Ghanasyam Rallapalli; Diane Go Saunders; Kentaro Yoshida; Anne Edwards; Carlos A Lugo; Steve Collin; Bernardo Clavijo; Manuel Corpas; David Swarbreck; Matthew Clark; J Allan Downie; Sophien Kamoun; Dan MacLean
Journal:  Elife       Date:  2015-07-29       Impact factor: 8.140

10.  Kinetic Characterization of 100 Glycoside Hydrolase Mutants Enables the Discovery of Structural Features Correlated with Kinetic Constants.

Authors:  Dylan Alexander Carlin; Ryan W Caster; Xiaokang Wang; Stephanie A Betzenderfer; Claire X Chen; Veasna M Duong; Carolina V Ryklansky; Alp Alpekin; Nathan Beaumont; Harshul Kapoor; Nicole Kim; Hosna Mohabbot; Boyu Pang; Rachel Teel; Lillian Whithaus; Ilias Tagkopoulos; Justin B Siegel
Journal:  PLoS One       Date:  2016-01-27       Impact factor: 3.240

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  1 in total

1.  Pepblock Builder VR - An Open-Source Tool for Gaming-Based Bio-Edutainment in Interactive Protein Design.

Authors:  Venkata V B Yallapragada; Tianshu Xu; Sidney P Walker; Sabin Tabirca; Mark Tangney
Journal:  Front Bioeng Biotechnol       Date:  2021-05-14
  1 in total

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