Literature DB >> 30460733

New Member of Gromochytriales (Chytridiomycetes)-Apiochytrium granulosporum nov. gen. et sp.

Sergey A Karpov1,2, David Moreira3, Maria A Mamkaeva2, Olga V Popova4, Vladimir V Aleoshin4,5, Purificación López-García3.   

Abstract

Molecular phylogenetic analysis of 18S rRNA gene sequences of nearly any species of Chytridiomycota has typically challenged traditional classification and triggered taxonomic revision. This has often led to the establishment of new taxa which, normally, appears well supported by zoospore ultrastructure, which provides diagnostic characters. To construct a meaningful and comprehensive classification of Chytridiomycota, the combination of molecular phylogenies and morphological studies of traditionally defined chytrid species is needed. In this work, we have studied morphological and ultrastructural features based on light and transmission electron microscopy as well as molecular phylogenetic analysis of a parasite (strain X-124 CCPP ZIN RAS) morphologically similar to Rhizophydium granulosporum living on the yellow-green alga Tribonema gayanum. Phylogenetic analysis of the 18S rRNA gene sequence of this strain supports that it represents a new genus and species affiliated to the recently established order Gromochytriales. The ultrastructure of X-124 confirms its phylogenetic position sister to Gromochytrium and serves as the basis for the description of the new genus and species Apiochytrium granulosporum. The 18S rRNA gene of A. granulosporum contains a S943 group I intron that carries a homing endonuclease pseudogene.
© 2018 International Society of Protistologists.

Entities:  

Keywords:  Chytrids; endonuclease pseudogene; intron; molecular phylogeny; ultrastructure

Mesh:

Substances:

Year:  2018        PMID: 30460733      PMCID: PMC6685791          DOI: 10.1111/jeu.12702

Source DB:  PubMed          Journal:  J Eukaryot Microbiol        ISSN: 1066-5234            Impact factor:   3.346


  24 in total

Review 1.  Homing endonucleases: structural and functional insight into the catalysts of intron/intein mobility.

Authors:  B S Chevalier; B L Stoddard
Journal:  Nucleic Acids Res       Date:  2001-09-15       Impact factor: 16.971

2.  MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform.

Authors:  Kazutaka Katoh; Kazuharu Misawa; Kei-ichi Kuma; Takashi Miyata
Journal:  Nucleic Acids Res       Date:  2002-07-15       Impact factor: 16.971

3.  The evolution of homing endonuclease genes and group I introns in nuclear rDNA.

Authors:  Peik Haugen; Valérie Reeb; François Lutzoni; Debashish Bhattacharya
Journal:  Mol Biol Evol       Date:  2003-10-31       Impact factor: 16.240

4.  MUSCLE: multiple sequence alignment with high accuracy and high throughput.

Authors:  Robert C Edgar
Journal:  Nucleic Acids Res       Date:  2004-03-19       Impact factor: 16.971

5.  Ultrastructural and molecular phylogenetic delineation of a new order, the Rhizophydiales (Chytridiomycota).

Authors:  Peter M Letcher; Martha J Powell; Perry F Churchill; James G Chambers
Journal:  Mycol Res       Date:  2006-08-17

6.  Reconstructing the early evolution of Fungi using a six-gene phylogeny.

Authors:  Timothy Y James; Frank Kauff; Conrad L Schoch; P Brandon Matheny; Valérie Hofstetter; Cymon J Cox; Gail Celio; Cécile Gueidan; Emily Fraker; Jolanta Miadlikowska; H Thorsten Lumbsch; Alexandra Rauhut; Valérie Reeb; A Elizabeth Arnold; Anja Amtoft; Jason E Stajich; Kentaro Hosaka; Gi-Ho Sung; Desiree Johnson; Ben O'Rourke; Michael Crockett; Manfred Binder; Judd M Curtis; Jason C Slot; Zheng Wang; Andrew W Wilson; Arthur Schüssler; Joyce E Longcore; Kerry O'Donnell; Sharon Mozley-Standridge; David Porter; Peter M Letcher; Martha J Powell; John W Taylor; Merlin M White; Gareth W Griffith; David R Davies; Richard A Humber; Joseph B Morton; Junta Sugiyama; Amy Y Rossman; Jack D Rogers; Don H Pfister; David Hewitt; Karen Hansen; Sarah Hambleton; Robert A Shoemaker; Jan Kohlmeyer; Brigitte Volkmann-Kohlmeyer; Robert A Spotts; Maryna Serdani; Pedro W Crous; Karen W Hughes; Kenji Matsuura; Ewald Langer; Gitta Langer; Wendy A Untereiner; Robert Lücking; Burkhard Büdel; David M Geiser; André Aptroot; Paul Diederich; Imke Schmitt; Matthias Schultz; Rebecca Yahr; David S Hibbett; François Lutzoni; David J McLaughlin; Joseph W Spatafora; Rytas Vilgalys
Journal:  Nature       Date:  2006-10-19       Impact factor: 49.962

7.  Arbuscular mycorrhizal community composition associated with two plant species in a grassland ecosystem.

Authors:  P Vandenkoornhuyse; R Husband; T J Daniell; I J Watson; J M Duck; A H Fitter; J P W Young
Journal:  Mol Ecol       Date:  2002-08       Impact factor: 6.185

8.  A molecular phylogeny of the flagellated fungi (Chytridiomycota) and description of a new phylum (Blastocladiomycota).

Authors:  Timothy Y James; Peter M Letcher; Joyce E Longcore; Sharon E Mozley-Standridge; David Porter; Martha J Powell; Gareth W Griffith; Rytas Vilgalys
Journal:  Mycologia       Date:  2006 Nov-Dec       Impact factor: 2.696

9.  Lobulomycetales, a new order in the Chytridiomycota.

Authors:  D Rabern Simmons; Timothy Y James; Allen F Meyer; Joyce E Longcore
Journal:  Mycol Res       Date:  2008-12-25

10.  The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs.

Authors:  Jamie J Cannone; Sankar Subramanian; Murray N Schnare; James R Collett; Lisa M D'Souza; Yushi Du; Brian Feng; Nan Lin; Lakshmi V Madabusi; Kirsten M Müller; Nupur Pande; Zhidi Shang; Nan Yu; Robin R Gutell
Journal:  BMC Bioinformatics       Date:  2002-01-17       Impact factor: 3.169

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