| Literature DB >> 30453988 |
Soudeh Ghafouri-Fard1, Vahid Kholghi Oskooei1, Iman Azari1, Mohammad Taheri2,3.
Abstract
BACKGROUND: The suppressor of cytokine signaling (SOCS) family of proteins are inhibitors of the cytokine-activated Janus kinase/signal transducers and activators of transcription (JAK/STAT) signaling pathway. We aimed at evaluation of expression of SOCS genes in breast cancer.Entities:
Keywords: Breast cancer; Expression; Suppressor of cytokine signaling
Mesh:
Substances:
Year: 2018 PMID: 30453988 PMCID: PMC6245766 DOI: 10.1186/s12957-018-1529-9
Source DB: PubMed Journal: World J Surg Oncol ISSN: 1477-7819 Impact factor: 2.754
The nucleotide sequences of primers used for expression analysis
| Gene name | Primer and probe sequence | Primer and probe length | Product length |
|---|---|---|---|
|
| F: AGCCTAAGATGAGAGTTC | 18 | 88 |
| R: CACAGAACTAGAACATTGATA | 21 | ||
| FAM-CATCTGGAGTCCTATTGACATCGC-TAMRA | 24 | ||
|
| F: TGGCCCCTTCTGTAGGATGG | 20 | 109 |
| R: GGAGGAGGAAGAGGAGGAAGG | 21 | ||
| FAM-TGGCCCCTTCTGTAGGATGG-TAMRA | 20 | ||
|
| F: ACGCGAACCCTTCTCTGACC | 20 | 99 |
| R: CATTCCCGGAGGGCTCAAGG | 20 | ||
| FAM-CTCGGGCGGCCACCTGTCTTTGC-TAMRA | 23 | ||
|
| F: GTGGAGAGGCTGAGGGACTC | 20 | 111 |
| R: GGCTGACATTCCCAGTGCTC | 20 | ||
| FAM-CACCAAGCCAGCCCACAGCCAGG-TAMRA | 23 | ||
|
| F: GTGACTCGGAAGAGGATACAACC | 23 | 91 |
| R: CTAACATGGGTATGGCTGTCTCC | 23 | ||
| FAM-CGCTGCTTCTGCCTCCGTGACTGC-TAMRA | 24 |
General demographic data of study participants
| Variables | Values |
|---|---|
| Age (years) (mean ± SD) | 51.79 ± 13.54 (29–81) |
| Menarche age (years) (mean ± SD) | 13 ± 1.65 (10–18) |
| Menopause age (years) (mean ± SD) | 44.91 ± 14.91 (38–60) |
| First pregnancy age (years) (mean ± SD) | 18.04 ± 8.36 (14–32) |
| Breast feeding duration (months) (mean ± SD) | 41.62 ± 34.1 (3–120) |
| Cancer stage (%) | |
| I | 30.8 |
| II | 28.8 |
| III | 30.8 |
| IV | 9.6 |
| Overall grade (%) | |
| I | 17 |
| II | 49 |
| III | 34 |
| Mitotic rate (%) | |
| I | 45.2 |
| II | 42.9 |
| III | 11.9 |
| Tumor size (%) | |
| < 2 cm | 32 |
| ≥ 2 cm, < 5 cm | 66 |
| ≥ 5 cm | 2 |
| Estrogen receptor (%) | |
| Positive | 87.8 |
| Negative | 12.2 |
| Progesterone receptor (%) | |
| Positive | 77.1 |
| Negative | 22.9 |
| Her2/neu expression (%) | |
| Positive | 25 |
| Negative | 75 |
| Ki67 expression (%) | |
| Positive | 100 |
| Negative | 0 |
Fig. 1The relative expression of SOCS genes in tumoral tissues and ANCTs (Y-axis shows CTreference gene − CT target gene)
The results of association analysis between relative expressions of genes in tumoral tissues compared with ANCTs and patients’ clinicopathological data (up/downregulation of genes was defined based on relative expression of each gene in tumoral tissue compared with the corresponding ANCT. Patients with higher expression of genes in tumoral tissue compared with the paired ANCT were classified as upregulation (fold change > 1) and vice versa)
| Age | 0.35 | 0.5 | 0.84 | 0.68 | ||||||||
| < 55 years | 11 (32.4%) | 23 (67.6%) | 9 (26.5%) | 25 (73.5%) | 11 (32.4%) | 23 (67.6%) | 10 (29.4%) | 24 (70.6%) | ||||
| ≥ 55 years | 9 (45%) | 11 (55%) | 7 (35%) | 13 (65%) | 7 (35%) | 13 (65%) | 5 (25%) | 15 (75%) | ||||
| Stage | 0.95 | 0.81 | 0.8 | 0.86 | ||||||||
| 1 | 5 (31.3%) | 11 (68.7%) | 5 (31.3%) | 11 (68.7%) | 4 (25%) | 12 (75%) | 3 (18.8%) | 13 (81.2%) | ||||
| 2 | 6 (40%) | 9 (60%) | 6 (40%) | 9 (60%) | 6 (40%) | 9 (60%) | 5 (33.3%) | 10 (66.7%) | ||||
| 3 | 7 (43.8%) | 9 (56.3%) | 4 (25%) | 12 (75%) | 5 (31.2%) | 11 (68.8%) | 5 (31.2%) | 11 (68.8%) | ||||
| 4 | 2 (40%) | 3 (60%) | 1 (20%) | 4 (80%) | 2 (40%) | 3 (60%) | 1 (20%) | 4 (80%) | ||||
| Histological grade | 0.32 | 0.18 | 0.08 | 0.19 | ||||||||
| 1 | 2 (25%) | 6 (75%) | 1 (12.5%) | 7 (87.5%) | 0 (0%) | 8 (100%) | 0 (0%) | 8 (100%) | ||||
| 2 | 12 (52.2%) | 11 (47.8%) | 10 (43.5%) | 13 (56.5%) | 9 (39.1%) | 14 (60.9%) | 8 (34.8%) | 15 (65.2%) | ||||
| 3 | 5 (31.3%) | 11 (68.8%) | 3 (18.8%) | 13 (81.2%) | 7 (43.8%) | 9 (56.2%) | 4 (25%) | 12 (75%) | ||||
| Mitotic rate | 0.36 | 0.03 | 0.9 | 0.16 | ||||||||
| 1 | 10 (52.6%) | 9 (47.4%) | 10 (52.6%) | 9 (47.4%) | 8 (42.1%) | 11 (57.9%) | 8 (42.1%) | 11 (57.9%) | ||||
| 2 | 6 (33.3%) | 12 (66.7%) | 4 (22.2%) | 14 (77.8%) | 6 (33.3%) | 12 (66.7%) | 4 (22.2%) | 14 (77.8%) | ||||
| 3 | 1 (20%) | 4 (80%) | 0 (0%) | 5 (100%) | 2 (40%) | 3 (60%) | 0 (0%) | 5 (100%) | ||||
| Tumor size | 0.26 | 0.29 | 1 | 0.38 | ||||||||
| < 2 | 4 (25%) | 12 (75%) | 5 (31.3%) | 11 (68.8%) | 5 (31.3%) | 11 (68.8%) | 4 (25%) | 12 (75%) | ||||
| 2–5 | 15 (45.5%) | 18 (54.5%) | 9 (27.3%) | 24 (72.7%) | 11 (33.3%) | 12 (66.7%) | 8 (24.2%) | 25 (75.8%) | ||||
| > 5 | 0 (0%) | 1 (100%) | 1 (100%) | 0 (0%) | 0 (0%) | 1 (100%) | 1 (100%) | 0 (0%) | ||||
| ER state | 0.81 | 0.63 | 1 | 0.36 | ||||||||
| Positive | 16 (38.1%) | 26 (61.9%) | 13 (31%) | 29 (69%) | 14 (33.3%) | 28 (66.7%) | 10 (23.8%) | 32 (76.2%) | ||||
| Negative | 3 (42.9%) | 4 (57.1%) | 2 (28.6%) | 5 (71.4%) | 2 (28.6%) | 5 (71.4%) | 3 (42.9%) | 4 (57.1%) | ||||
| PR state | 0.8 | 0.72 | 0.33 | 0.45 | ||||||||
| Positive | 15 (40.5%) | 22 (59.5%) | 11 (29.7%) | 26 (70.3%) | 11 (29.7%) | 26 (70.3%) | 9 (24.3%) | 28 (75%) | ||||
| Negative | 4 (36.4%) | 7 (63.6%) | 4 (36.4%) | 7 (63.6%) | 5 (45.5%) | 6 (54.5%) | 4 (36.4%) | 7 (63.6%) | ||||
| Her2 state | 0.39 | 0.85 | 0.15 | 0.18 | ||||||||
| Positive | 6 (50%) | 6 (50%) | 4 (33.3%) | 8 (66.7%) | 6 (50%) | 6 (50%) | 5 (41.7%) | 7 (58.3%) | ||||
| Negative | 13 (36.1%) | 23 (63.9%) | 11 (30.6%) | 25 (69.4%) | 10 (27.8%) | 26 (72.2%) | 8 (22.2%) | 28 (77.8%) | ||||
| Breast feeding duration (months) | 0.3 | 0.84 | 0.08 | 0.19 | ||||||||
| 0 | 4 (50%) | 4 (50%) | 2 (25%) | 6 (75%) | 5 (62.5%) | 3 (37.5%) | 4 (50%) | 4 (50%) | ||||
| 1–30 | 8 (53.3%) | 7 (46.7%) | 6 (40%) | 9 (60%) | 6 (40%) | 9 (60%) | 6 (40%) | 9 (60%) | ||||
| 31–60 | 5 (27.8%) | 13 (72.2%) | 5 (27.8%) | 13 (72.2%) | 6 (33.3%) | 12 (66.7%) | 3 (16.7%) | 15 (83.3%) | ||||
| 61–120 | 3 (25%) | 9 (75%) | 3 (25%) | 9 (75%) | 1 (8.3%) | 11 (91.7%) | 2 (16.7%) | 10 (83.3%) | ||||
Comparison of expression levels of SOCS genes in tumoral tissue of breast cancer patients between clinicopathological-based categories (Mean and SD values of (E^CTHPRT/E^CTtarget gene) are presented)
| Age | ||||||||
| < 55 years vs. ≥ 55 years | 496.1 (2.6) vs. 592.9 (2.6) | 0.88 | 1.5 (7.9) vs. 10.9 (17.2) | 0.43 | 199.5 (542.6) vs. 84.7 (372.8) | 0.4 | 16.7 (44.9) vs. 1.1 (4.9) | 0.33 |
| ER status | ||||||||
| ER (+) vs. ER (−) | 675.4 (2.9) vs. 0.6 (0.8) | 0.55 | 1.2 (7.1) vs. 5.1 (7.7) | 0.64 | 192.5 (545.1) vs. 55.1 (127.2) | 0.51 | 537.3 (3.3) vs. 1.5 (1.5) | 0.68 |
| PR status | ||||||||
| PR (+) vs. PR (−) | 766.1 (3.1) vs. 2.5 (6.9) | 0.42 | 1.4 (7.5) vs. 4 (5.9) | 0.53 | 216.6 (577.2) vs. 41.5 (102.1) | 0.08 | 609.9 (3.6) vs. 1.2 (1.3) | 0.58 |
| HER2 status | ||||||||
| HER2 (+) vs. HER2 (−) | 20 (25.1) vs. 781.5 (3.1) | 0.41 | 10.3 (17.8) vs. 1.4 (7.6) | 0.51 | 223.3 (763) vs. 160.9 (411.2) | 0.71 | 3.4 (5.6) vs. 626 (3.6) | 0.56 |
| Tumor grade | ||||||||
| Grade 1 vs. 2 | 3.4 (6.2) vs. 13.7 (23.4) | 0.004 | 6.5 (1.6) vs. 13.8 (20.6) | 0.04 | 596 (735) vs. 25.7 (63.9) | 0.01 | 2.8 (7.7) vs. 3.8 (7.1) | 0.08 |
| Grade 1 vs. 3 | 3.4 (6.2) vs. 8.1 (19.2) | 0.007 | 6.5 (1.6) vs. 10.8 (17.6) | 0.05 | 596 (735) vs. 194.5 (659.3) | 0.1 | 2.8 (7.7) vs. 2.3 (3.9) | 0.1 |
| Grade 2 vs. 3 | 13.7 (23.4) vs. 8.1 (19.2) | 1 | 13.8 (20.6) vs. 10.8 (17.6) | 1 | 25.7 (63.9) vs. 194.5 (659.3) | 0.5 | 3.8 (7.1) vs. 2.3 (3.9) | 1 |
Coefficients of determination (R square) values between expression levels of genes in tumoral tissues and ANCTs
|
|
|
| ||
|---|---|---|---|---|
|
| Tumor | 0.59** | 0.65** | 0.81** |
| ANCT | 0.96** | 0.85** | 0.52** | |
|
| Tumor | 0.02 | 0.5** | |
| ANCT | 0.69** | 0.88** | ||
|
| Tumor | 0.43* | ||
| ANCT | 0.95** | |||
Data show partial correlation as controlled for age
*Correlation is significant at P < 0.05 level, **correlation is significant at P < 0.01 level
Partial correlation between expression of genes and patients’ age and tumor grade
|
|
|
|
| |||||
|---|---|---|---|---|---|---|---|---|
|
|
|
|
| |||||
| Age (controlled for grade) | − 0.02 | 0.88 | − 0.03 | 0.84 | − 0.06 | 0.66 | − 0.007 | 0.96 |
| Grade (controlled for age) | − 0.36 | 0.007 | − 0.28 | 0.02 | − 0.18 | 0.1 | − 0.25 | 0.04 |
Fig. 2ROC curve for assessment of SOCS genes expression levels as diagnostic markers for breast cancer
The results of ROC curve analysis
| Estimate criterion | AUC |
| Sensitivity | Specificity | ||
|---|---|---|---|---|---|---|
|
| > 2.7 | 0.6 | 0.2 | 40.7 | 79.6 | 0.05 |
|
| > − 2.4 | 0.64 | 0.25 | 88.9 | 37 | 0.007 |
|
| > − 0.9 | 0.63 | 0.24 | 72.2 | 51.9 | 0.01 |
|
| > − 0.8 | 0.67 | 0.25 | 75.9 | 50 | 0.0009 |
| Combination of all genes | ≤ 0.5 | 0.68 | 0.35 | 64.8 | 70.4 | 0.0004 |
Estimate criterion: optimal cutoff point for gene expression
aYouden index,
bSignificance level P (area = 0.5)