Literature DB >> 30452759

Genome analyses for the Tohoku Medical Megabank Project towards establishment of personalized healthcare.

Jun Yasuda1, Kengo Kinoshita1,2,3, Fumiki Katsuoka1, Inaho Danjoh1, Mika Sakurai-Yageta1, Ikuko N Motoike1, Yoko Kuroki1, Sakae Saito1, Kaname Kojima1, Matsuyuki Shirota1,4, Daisuke Saigusa1, Akihito Otsuki1, Junko Kawashima1, Yumi Yamaguchi-Kabata1, Shu Tadaka1, Yuichi Aoki1, Takahiro Mimori1, Kazuki Kumada1, Jin Inoue1, Satoshi Makino1, Miho Kuriki1, Nobuo Fuse1, Seizo Koshiba1, Osamu Tanabe1, Masao Nagasaki1, Gen Tamiya1, Ritsuko Shimizu1,5, Takako Takai-Igarashi1, Soichi Ogishima1, Atsushi Hozawa1, Shinichi Kuriyama1,6, Junichi Sugawara1, Akito Tsuboi1, Hideyasu Kiyomoto1, Tadashi Ishii1,7, Hiroaki Tomita1,6, Naoko Minegishi1, Yoichi Suzuki1, Kichiya Suzuki1, Hiroshi Kawame1, Hiroshi Tanaka1,8, Yasuyuki Taki1,3, Nobuo Yaegashi1,9, Shigeo Kure1,10, Fuji Nagami1, Kenjiro Kosaki11, Yoichi Sutoh12, Tsuyoshi Hachiya12, Atsushi Shimizu12, Makoto Sasaki12,13, Masayuki Yamamoto1,14.   

Abstract

Personalized healthcare (PHC) based on an individual's genetic make-up is one of the most advanced, yet feasible, forms of medical care. The Tohoku Medical Megabank (TMM) Project aims to combine population genomics, medical genetics and prospective cohort studies to develop a critical infrastructure for the establishment of PHC. To date, a TMM CommCohort (adult general population) and a TMM BirThree Cohort (birth+three-generation families) have conducted recruitments and baseline surveys. Genome analyses as part of the TMM Project will aid in the development of a high-fidelity whole-genome Japanese reference panel, in designing custom single-nucleotide polymorphism (SNP) arrays specific to Japanese, and in estimation of the biological significance of genetic variations through linked investigations of the cohorts. Whole-genome sequencing from >3,500 unrelated Japanese and establishment of a Japanese reference genome sequence from long-read data have been done. We next aim to obtain genotype data for all TMM cohort participants (>150,000) using our custom SNP arrays. These data will help identify disease-associated genomic signatures in the Japanese population, while genomic data from TMM BirThree Cohort participants will be used to improve the reference genome panel. Follow-up of the cohort participants will allow us to test the genetic markers and, consequently, contribute to the realization of PHC.

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Year:  2019        PMID: 30452759     DOI: 10.1093/jb/mvy096

Source DB:  PubMed          Journal:  J Biochem        ISSN: 0021-924X            Impact factor:   3.387


  15 in total

1.  Novel candidates of pathogenic variants of the BRCA1 and BRCA2 genes from a dataset of 3,552 Japanese whole genomes (3.5KJPNv2).

Authors:  Hideki Tokunaga; Keita Iida; Atsushi Hozawa; Soichi Ogishima; Yoh Watanabe; Shogo Shigeta; Muneaki Shimada; Yumi Yamaguchi-Kabata; Shu Tadaka; Fumiki Katsuoka; Shin Ito; Kazuki Kumada; Yohei Hamanaka; Nobuo Fuse; Kengo Kinoshita; Masayuki Yamamoto; Nobuo Yaegashi; Jun Yasuda
Journal:  PLoS One       Date:  2021-01-11       Impact factor: 3.240

2.  Ethical and Policy Considerations for Genomic Testing in Pediatric Research: The Path Toward Disclosing Individual Research Results.

Authors:  Craig S Wong; Amy J Kogon; Bradley A Warady; Susan L Furth; John D Lantos; Benjamin S Wilfond
Journal:  Am J Kidney Dis       Date:  2019-03-14       Impact factor: 8.860

Review 3.  Gene-environment interactions related to maternal exposure to environmental and lifestyle-related chemicals during pregnancy and the resulting adverse fetal growth: a review.

Authors:  Sumitaka Kobayashi; Fumihiro Sata; Reiko Kishi
Journal:  Environ Health Prev Med       Date:  2022       Impact factor: 4.395

4.  Pathogenic mutations identified by a multimodality approach in 117 Japanese Fanconi anemia patients.

Authors:  Minako Mori; Asuka Hira; Kenichi Yoshida; Hideki Muramatsu; Yusuke Okuno; Yuichi Shiraishi; Michiko Anmae; Jun Yasuda; Shu Tadaka; Kengo Kinoshita; Tomoo Osumi; Yasushi Noguchi; Souichi Adachi; Ryoji Kobayashi; Hiroshi Kawabata; Kohsuke Imai; Tomohiro Morio; Kazuo Tamura; Akifumi Takaori-Kondo; Masayuki Yamamoto; Satoru Miyano; Seiji Kojima; Etsuro Ito; Seishi Ogawa; Keitaro Matsuo; Hiromasa Yabe; Miharu Yabe; Minoru Takata
Journal:  Haematologica       Date:  2019-02-21       Impact factor: 9.941

5.  Prediction Model of Deep Learning for Ambulance Transports in Kesennuma City by Meteorological Data.

Authors:  Ohmi Watanabe; Norio Narita; Masahito Katsuki; Naoya Ishida; Siqi Cai; Hiroshi Otomo; Kenichi Yokota
Journal:  Open Access Emerg Med       Date:  2021-01-28

6.  Oral Microbiome Analysis in Prospective Genome Cohort Studies of the Tohoku Medical Megabank Project.

Authors:  Sakae Saito; Yuichi Aoki; Toru Tamahara; Maki Goto; Hiroyuki Matsui; Junko Kawashima; Inaho Danjoh; Atsushi Hozawa; Shinichi Kuriyama; Yoichi Suzuki; Nobuo Fuse; Shigeo Kure; Riu Yamashita; Osamu Tanabe; Naoko Minegishi; Kengo Kinoshita; Akito Tsuboi; Ritsuko Shimizu; Masayuki Yamamoto
Journal:  Front Cell Infect Microbiol       Date:  2021-01-29       Impact factor: 5.293

7.  The return of individual genomic results to research participants: design and pilot study of Tohoku Medical Megabank Project.

Authors:  Hiroshi Kawame; Akimune Fukushima; Nobuo Fuse; Fuji Nagami; Yoichi Suzuki; Mika Sakurai-Yageta; Jun Yasuda; Yumi Yamaguchi-Kabata; Kengo Kinoshita; Soichi Ogishima; Takako Takai; Shinichi Kuriyama; Atsushi Hozawa; Naoki Nakaya; Tomohiro Nakamura; Naoko Minegishi; Junichi Sugawara; Kichiya Suzuki; Hiroaki Tomita; Akira Uruno; Tomoko Kobayashi; Yayoi Aizawa; Tomoharu Tokutomi; Kayono Yamamoto; Kinuko Ohneda; Shigeo Kure; Yoko Aoki; Hideki Katagiri; Yasushi Ishigaki; Shojiro Sawada; Makoto Sasaki; Masayuki Yamamoto
Journal:  J Hum Genet       Date:  2021-07-08       Impact factor: 3.172

8.  Cohort Profile: Tohoku Medical Megabank Project Birth and Three-Generation Cohort Study (TMM BirThree Cohort Study): rationale, progress and perspective.

Authors:  Shinichi Kuriyama; Hirohito Metoki; Masahiro Kikuya; Taku Obara; Mami Ishikuro; Chizuru Yamanaka; Masato Nagai; Hiroko Matsubara; Tomoko Kobayashi; Junichi Sugawara; Gen Tamiya; Atsushi Hozawa; Naoki Nakaya; Naho Tsuchiya; Tomohiro Nakamura; Akira Narita; Mana Kogure; Takumi Hirata; Ichiro Tsuji; Fuji Nagami; Nobuo Fuse; Tomohiko Arai; Yoshio Kawaguchi; Shinichi Higuchi; Masaki Sakaida; Yoichi Suzuki; Noriko Osumi; Keiko Nakayama; Kiyoshi Ito; Shinichi Egawa; Koichi Chida; Eiichi Kodama; Hideyasu Kiyomoto; Tadashi Ishii; Akito Tsuboi; Hiroaki Tomita; Yasuyuki Taki; Hiroshi Kawame; Kichiya Suzuki; Naoto Ishii; Soichi Ogishima; Satoshi Mizuno; Takako Takai-Igarashi; Naoko Minegishi; Jun Yasuda; Kazuhiko Igarashi; Ritsuko Shimizu; Masao Nagasaki; Osamu Tanabe; Seizo Koshiba; Hiroaki Hashizume; Hozumi Motohashi; Teiji Tominaga; Sadayoshi Ito; Kozo Tanno; Kiyomi Sakata; Atsushi Shimizu; Jiro Hitomi; Makoto Sasaki; Kengo Kinoshita; Hiroshi Tanaka; Tadao Kobayashi; Shigeo Kure; Nobuo Yaegashi; Masayuki Yamamoto
Journal:  Int J Epidemiol       Date:  2020-02-01       Impact factor: 7.196

9.  Identification of critical genetic variants associated with metabolic phenotypes of the Japanese population.

Authors:  Seizo Koshiba; Ikuko N Motoike; Daisuke Saigusa; Jin Inoue; Yuichi Aoki; Shu Tadaka; Matsuyuki Shirota; Fumiki Katsuoka; Gen Tamiya; Naoko Minegishi; Nobuo Fuse; Kengo Kinoshita; Masayuki Yamamoto
Journal:  Commun Biol       Date:  2020-11-11

10.  ALDH2 genotype modulates the association between alcohol consumption and AST/ALT ratio among middle-aged Japanese men: a genome-wide G × E interaction analysis.

Authors:  Yoichi Sutoh; Tsuyoshi Hachiya; Yuji Suzuki; Shohei Komaki; Hideki Ohmomo; Keisuke Kakisaka; Ting Wang; Yasuhiro Takikawa; Atsushi Shimizu
Journal:  Sci Rep       Date:  2020-10-01       Impact factor: 4.379

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