Literature DB >> 30448232

Selection of Protein-Protein Interactions of Desired Affinities with a Bandpass Circuit.

Katherine E Brechun1, Katja M Arndt2, G Andrew Woolley3.   

Abstract

We have developed a genetic circuit in Escherichia coli that can be used to select for protein-protein interactions of different strengths by changing antibiotic concentrations in the media. The genetic circuit links protein-protein interaction strength to β-lactamase activity while simultaneously imposing tuneable positive and negative selection pressure for β-lactamase activity. Cells only survive if they express interacting proteins with affinities that fall within set high- and low-pass thresholds; i.e. the circuit therefore acts as a bandpass filter for protein-protein interactions. We show that the circuit can be used to recover protein-protein interactions of desired affinity from a mixed population with a range of affinities. The circuit can also be used to select for inhibitors of protein-protein interactions of defined strength.
Copyright © 2018 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  biological engineering; genetic circuit; protein–protein interactions; selection system; synthetic biology; twin-arginine translocation

Mesh:

Substances:

Year:  2018        PMID: 30448232      PMCID: PMC6331253          DOI: 10.1016/j.jmb.2018.11.011

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  47 in total

1.  A heterodimeric coiled-coil peptide pair selected in vivo from a designed library-versus-library ensemble.

Authors:  K M Arndt; J N Pelletier; K M Müller; T Alber; S W Michnick; A Plückthun
Journal:  J Mol Biol       Date:  2000-01-21       Impact factor: 5.469

2.  Co-translocation of a periplasmic enzyme complex by a hitchhiker mechanism through the bacterial tat pathway.

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Journal:  J Biol Chem       Date:  1999-05-07       Impact factor: 5.157

3.  Phage Display.

Authors:  George P. Smith; Valery A. Petrenko
Journal:  Chem Rev       Date:  1997-04-01       Impact factor: 60.622

Review 4.  Coiled coil domains: stability, specificity, and biological implications.

Authors:  Jody M Mason; Katja M Arndt
Journal:  Chembiochem       Date:  2004-02-06       Impact factor: 3.164

Review 5.  Diversity of protein-protein interactions.

Authors:  Irene M A Nooren; Janet M Thornton
Journal:  EMBO J       Date:  2003-07-15       Impact factor: 11.598

6.  Comparison of in vivo selection and rational design of heterodimeric coiled coils.

Authors:  Katja M Arndt; Joelle N Pelletier; Kristian M Müller; Andreas Plückthun; Tom Alber
Journal:  Structure       Date:  2002-09       Impact factor: 5.006

Review 7.  AP-1 subunits: quarrel and harmony among siblings.

Authors:  Jochen Hess; Peter Angel; Marina Schorpp-Kistner
Journal:  J Cell Sci       Date:  2004-12-01       Impact factor: 5.285

Review 8.  Protein-protein interactions in human disease.

Authors:  Daniel P Ryan; Jacqueline M Matthews
Journal:  Curr Opin Struct Biol       Date:  2005-08       Impact factor: 6.809

9.  Fine affinity discrimination by yeast surface display and flow cytometry.

Authors:  J J VanAntwerp; K D Wittrup
Journal:  Biotechnol Prog       Date:  2000 Jan-Feb

10.  Genetic selection for protein solubility enabled by the folding quality control feature of the twin-arginine translocation pathway.

Authors:  Adam C Fisher; Woojin Kim; Matthew P DeLisa
Journal:  Protein Sci       Date:  2006-02-01       Impact factor: 6.725

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