| Literature DB >> 30443387 |
Muhamad Fikri Zaini1, Ibrahim Abdul Razak1, Wan Mohd Khairul2, Suhana Arshad1.
Abstract
The asymmetric unit of the title compound, 2C17H12N2O3·H2O comprises two mol-ecules of (E)-3-(1H-indol-2-yl)-1-(4-nitro-phen-yl)prop-2-en-1-one and a water mol-ecule. The main mol-ecule adopts an s-cis configuration with respect to the C=O and C=C bonds. The dihedral angle between the indole ring system and the nitro-substituted benzene ring is 37.64 (16)°. In the crystal, mol-ecules are linked by O--H⋯O and N-H⋯O hydrogen bonds, forming chains along [010]. In addition, weak C-H⋯O, C-H⋯π and π-π inter-actions further link the structure into a three-dimensional network. The optimized structure was generated theoretically via a density functional theory (DFT) approach at the B3LYP/6-311 G++(d,p) basis level and the HOMO-LUMO behaviour was elucidated to determine the energy gap. The obtained values of 2.70 eV (experimental) and 2.80 eV (DFT) are desirable for optoelectronic applications. The inter-molecular inter-actions were qu-anti-fied and analysed using Hirshfeld surface analysis.Entities:
Keywords: DFT; HOMO–LUMO; Hirshfeld surface; UV–vis; chalcone; crystal structure
Year: 2018 PMID: 30443387 PMCID: PMC6218902 DOI: 10.1107/S2056989018014329
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1(a) The molecular structure of the title compound showing 50% probability ellipsoids, (b) the optimized molecular structure and (c) a representation of the molecule showing the dihedral angle between the two chosen planes.
Hydrogen-bond geometry (Å, °)
Cg1 is the centroid of the N1/C1/C6–C8 ring.
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O1 | 0.88 (4) | 1.86 (4) | 2.723 (4) | 171 (4) |
| N1—H1 | 0.87 (3) | 2.06 (3) | 2.923 (4) | 170 (3) |
| C4—H4 | 0.93 | 2.60 | 3.405 (6) | 146 |
| C9—H9 | 0.93 | 2.87 | 3.518 (4) | 127 |
Symmetry codes: (i) ; (ii) ; (iii) .
Figure 2The crystal packing of the title compound along the b axis showing the O—H⋯O and N—H⋯O hydrogen bonds as dotted lines.
Figure 3(a) A view of the crystal packing showing two of the chains linked by C—H⋯O interactions extending along c-axis direction. The π–π stacking interactions shown by grey lines further stabilize the crystal structure. (b) C—H⋯π interactions in the title compound. H atoms not involved in hydrogen-bonding interactions have been omitted for clarity.
Figure 4Hirshfeld surface of the title compound mapped over d norm.
Figure 5Fingerprint plots of the intermolecular interactions showing the percentage contributions to the total Hirshfeld surface.
Figure 6Graphical view of the Hirshfeld surfaces for the title compound (a) mapped over d e with a pale-orange spot and (b) mapped over shape-index with a bright-red spot, both inside the black arrows, signifying the involvement of the C—H⋯π interactions.
Figure 7Molecular orbitals showing electronic transition between HOMO–LUMO of the title compound.
Figure 8The UV–vis absorption spectrum of the title compound.
Experimental details
| Crystal data | |
| Chemical formula | 2C17H12N2O3·H2O |
|
| 602.59 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 296 |
|
| 14.835 (7), 6.453 (2), 28.000 (11) |
| β (°) | 93.505 (10) |
|
| 2675.4 (18) |
|
| 4 |
| Radiation type | Mo |
| μ (mm−1) | 0.11 |
| Crystal size (mm) | 0.83 × 0.31 × 0.04 |
| Data collection | |
| Diffractometer | Bruker APEXII CCD |
| Absorption correction | Multi-scan ( |
|
| 0.638, 0.955 |
| No. of measured, independent and observed [ | 36005, 2369, 1263 |
|
| 0.129 |
| (sin θ/λ)max (Å−1) | 0.595 |
| Refinement | |
|
| 0.061, 0.190, 1.07 |
| No. of reflections | 2369 |
| No. of parameters | 213 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| Δρmax, Δρmin (e Å−3) | 0.22, −0.19 |
Computer programs: APEX2 and SAINT (Bruker, 2009 ▸), SHELXS97 (Sheldrick 2008 ▸), SHELXL2013 (Sheldrick, 2015 ▸), DIAMOND (Brandenburg, 2009 ▸), Mercury (Macrae et al., 2008 ▸) and PLATON (Spek, 2009 ▸).
| 2C17H12N2O3·H2O | |
| Monoclinic, | Mo |
| Cell parameters from 1566 reflections | |
| θ = 2.9–19.5° | |
| µ = 0.11 mm−1 | |
| β = 93.505 (10)° | |
| Plate, orange | |
| 0.83 × 0.31 × 0.04 mm |
| Bruker APEXII CCD diffractometer | 1263 reflections with |
| φ and ω scans | |
| Absorption correction: multi-scan (SADABS; Bruker, 2009) | θmax = 25.0°, θmin = 2.8° |
| 36005 measured reflections | |
| 2369 independent reflections |
| Refinement on | Hydrogen site location: mixed |
| Least-squares matrix: full | H atoms treated by a mixture of independent and constrained refinement |
| (Δ/σ)max < 0.001 | |
| Δρmax = 0.22 e Å−3 | |
| 2369 reflections | Δρmin = −0.19 e Å−3 |
| 213 parameters | Extinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
| 0 restraints | Extinction coefficient: 0.0010 (4) |
| Experimental. The following wavelength and cell were deduced by SADABS from the direction cosines etc. They are given here for emergency use only: CELL 0.71150 6.604 8.276 28.665 93.349 89.966 113.537 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| N1 | 0.8500 (2) | 0.5670 (5) | 0.21045 (11) | 0.0608 (8) | |
| H1A | 0.892 (2) | 0.494 (6) | 0.2257 (13) | 0.071 (12)* | |
| N2 | 1.1251 (3) | 0.4606 (7) | 0.48886 (12) | 0.0826 (11) | |
| O1 | 0.98111 (17) | 1.0824 (4) | 0.33010 (9) | 0.0713 (8) | |
| O2 | 1.1071 (3) | 0.2810 (6) | 0.49214 (12) | 0.1143 (13) | |
| O3 | 1.1754 (2) | 0.5484 (6) | 0.51669 (11) | 0.1137 (12) | |
| C1 | 0.8028 (2) | 0.5110 (6) | 0.16995 (12) | 0.0579 (9) | |
| C2 | 0.8031 (3) | 0.3301 (6) | 0.14546 (14) | 0.0712 (11) | |
| H2A | 0.8396 | 0.2200 | 0.1559 | 0.085* | |
| C3 | 0.7485 (3) | 0.3159 (7) | 0.10529 (15) | 0.0802 (12) | |
| H3A | 0.7470 | 0.1935 | 0.0877 | 0.096* | |
| C4 | 0.6954 (3) | 0.4782 (8) | 0.09007 (15) | 0.0802 (12) | |
| H4A | 0.6584 | 0.4637 | 0.0622 | 0.096* | |
| C5 | 0.6950 (3) | 0.6569 (7) | 0.11385 (14) | 0.0750 (12) | |
| H5A | 0.6590 | 0.7666 | 0.1025 | 0.090* | |
| C6 | 0.7487 (2) | 0.6766 (6) | 0.15553 (13) | 0.0620 (10) | |
| C7 | 0.7659 (2) | 0.8323 (6) | 0.18888 (13) | 0.0613 (10) | |
| H7A | 0.7388 | 0.9623 | 0.1884 | 0.074* | |
| C8 | 0.8281 (2) | 0.7644 (6) | 0.22200 (12) | 0.0569 (9) | |
| C9 | 0.8692 (2) | 0.8667 (6) | 0.26162 (12) | 0.0586 (10) | |
| H9A | 0.8545 | 1.0055 | 0.2656 | 0.070* | |
| C10 | 0.9266 (2) | 0.7848 (6) | 0.29370 (12) | 0.0603 (10) | |
| H10A | 0.9386 | 0.6439 | 0.2913 | 0.072* | |
| C11 | 0.9717 (2) | 0.8965 (6) | 0.33203 (12) | 0.0574 (9) | |
| C12 | 1.0089 (2) | 0.7823 (5) | 0.37368 (12) | 0.0560 (9) | |
| C13 | 0.9864 (3) | 0.5825 (6) | 0.38163 (13) | 0.0678 (11) | |
| H13A | 0.9450 | 0.5162 | 0.3605 | 0.081* | |
| C14 | 1.0231 (3) | 0.4790 (6) | 0.41952 (13) | 0.0694 (11) | |
| H14A | 1.0072 | 0.3421 | 0.4249 | 0.083* | |
| C15 | 1.0831 (2) | 0.5757 (6) | 0.44943 (12) | 0.0634 (10) | |
| C16 | 1.1064 (3) | 0.7740 (7) | 0.44334 (14) | 0.0729 (11) | |
| H16A | 1.1475 | 0.8391 | 0.4648 | 0.088* | |
| C17 | 1.0683 (3) | 0.8770 (6) | 0.40510 (13) | 0.0668 (11) | |
| H17A | 1.0832 | 1.0152 | 0.4004 | 0.080* | |
| O1W | 1.0000 | 0.3138 (6) | 0.2500 | 0.0710 (11) | |
| H1OW | 1.012 (3) | 0.237 (6) | 0.2254 (14) | 0.094 (15)* |
| N1 | 0.061 (2) | 0.063 (2) | 0.0561 (19) | 0.0041 (17) | −0.0096 (16) | 0.0024 (16) |
| N2 | 0.090 (3) | 0.093 (3) | 0.063 (2) | 0.004 (2) | −0.010 (2) | 0.008 (2) |
| O1 | 0.0864 (19) | 0.0584 (17) | 0.0674 (17) | −0.0039 (14) | −0.0090 (14) | 0.0005 (13) |
| O2 | 0.153 (3) | 0.089 (2) | 0.096 (2) | −0.002 (2) | −0.032 (2) | 0.025 (2) |
| O3 | 0.128 (3) | 0.128 (3) | 0.079 (2) | −0.006 (2) | −0.043 (2) | 0.007 (2) |
| C1 | 0.056 (2) | 0.064 (2) | 0.053 (2) | −0.0047 (18) | −0.0023 (17) | 0.0009 (19) |
| C2 | 0.079 (3) | 0.064 (3) | 0.069 (3) | −0.002 (2) | −0.001 (2) | −0.008 (2) |
| C3 | 0.081 (3) | 0.084 (3) | 0.076 (3) | −0.014 (3) | 0.006 (2) | −0.018 (2) |
| C4 | 0.065 (3) | 0.106 (3) | 0.068 (3) | −0.011 (3) | −0.008 (2) | −0.015 (3) |
| C5 | 0.067 (3) | 0.087 (3) | 0.069 (3) | 0.004 (2) | −0.014 (2) | −0.003 (2) |
| C6 | 0.057 (2) | 0.067 (2) | 0.060 (2) | −0.004 (2) | −0.0039 (18) | 0.002 (2) |
| C7 | 0.061 (2) | 0.056 (2) | 0.066 (2) | 0.0046 (18) | −0.0078 (19) | 0.005 (2) |
| C8 | 0.057 (2) | 0.056 (2) | 0.057 (2) | −0.0013 (18) | −0.0010 (18) | −0.0047 (18) |
| C9 | 0.057 (2) | 0.060 (2) | 0.058 (2) | −0.0015 (17) | −0.0025 (18) | −0.0025 (18) |
| C10 | 0.065 (2) | 0.056 (2) | 0.059 (2) | 0.0033 (18) | −0.0023 (19) | −0.0037 (19) |
| C11 | 0.055 (2) | 0.058 (2) | 0.058 (2) | 0.0012 (18) | −0.0013 (18) | −0.0020 (19) |
| C12 | 0.056 (2) | 0.055 (2) | 0.056 (2) | 0.0008 (18) | −0.0019 (18) | −0.0055 (18) |
| C13 | 0.072 (3) | 0.065 (2) | 0.064 (2) | −0.008 (2) | −0.015 (2) | 0.002 (2) |
| C14 | 0.077 (3) | 0.065 (3) | 0.064 (2) | −0.006 (2) | −0.006 (2) | 0.002 (2) |
| C15 | 0.068 (2) | 0.070 (3) | 0.051 (2) | 0.004 (2) | −0.0066 (19) | 0.000 (2) |
| C16 | 0.079 (3) | 0.076 (3) | 0.062 (2) | −0.010 (2) | −0.012 (2) | −0.007 (2) |
| C17 | 0.072 (2) | 0.064 (2) | 0.063 (2) | −0.008 (2) | −0.010 (2) | −0.005 (2) |
| O1W | 0.091 (3) | 0.055 (2) | 0.065 (3) | 0.000 | −0.012 (2) | 0.000 |
| N1—C1 | 1.345 (4) | C7—H7A | 0.9300 |
| N1—C8 | 1.359 (4) | C8—C9 | 1.399 (5) |
| N1—H1A | 0.87 (4) | C9—C10 | 1.310 (5) |
| N2—O3 | 1.189 (4) | C9—H9A | 0.9300 |
| N2—O2 | 1.194 (4) | C10—C11 | 1.426 (5) |
| N2—C15 | 1.440 (5) | C10—H10A | 0.9300 |
| O1—C11 | 1.209 (4) | C11—C12 | 1.459 (5) |
| C1—C2 | 1.354 (5) | C12—C17 | 1.353 (5) |
| C1—C6 | 1.382 (5) | C12—C13 | 1.353 (5) |
| C2—C3 | 1.348 (5) | C13—C14 | 1.341 (5) |
| C2—H2A | 0.9300 | C13—H13A | 0.9300 |
| C3—C4 | 1.363 (6) | C14—C15 | 1.338 (5) |
| C3—H3A | 0.9300 | C14—H14A | 0.9300 |
| C4—C5 | 1.332 (5) | C15—C16 | 1.339 (5) |
| C4—H4A | 0.9300 | C16—C17 | 1.354 (5) |
| C5—C6 | 1.378 (5) | C16—H16A | 0.9300 |
| C5—H5A | 0.9300 | C17—H17A | 0.9300 |
| C6—C7 | 1.385 (5) | O1W—H1OW | 0.88 (4) |
| C7—C8 | 1.341 (4) | ||
| C1—N1—C8 | 109.4 (3) | N1—C8—C9 | 122.2 (3) |
| C1—N1—H1A | 126 (2) | C10—C9—C8 | 126.0 (4) |
| C8—N1—H1A | 124 (2) | C10—C9—H9A | 117.0 |
| O3—N2—O2 | 123.1 (4) | C8—C9—H9A | 117.0 |
| O3—N2—C15 | 118.8 (4) | C9—C10—C11 | 124.6 (3) |
| O2—N2—C15 | 118.1 (4) | C9—C10—H10A | 117.7 |
| N1—C1—C2 | 129.9 (4) | C11—C10—H10A | 117.7 |
| N1—C1—C6 | 107.6 (3) | O1—C11—C10 | 121.2 (3) |
| C2—C1—C6 | 122.6 (3) | O1—C11—C12 | 119.9 (3) |
| C3—C2—C1 | 117.4 (4) | C10—C11—C12 | 118.9 (3) |
| C3—C2—H2A | 121.3 | C17—C12—C13 | 118.7 (4) |
| C1—C2—H2A | 121.3 | C17—C12—C11 | 119.4 (3) |
| C2—C3—C4 | 121.0 (4) | C13—C12—C11 | 121.9 (3) |
| C2—C3—H3A | 119.5 | C14—C13—C12 | 120.8 (4) |
| C4—C3—H3A | 119.5 | C14—C13—H13A | 119.6 |
| C5—C4—C3 | 122.0 (4) | C12—C13—H13A | 119.6 |
| C5—C4—H4A | 119.0 | C15—C14—C13 | 119.0 (4) |
| C3—C4—H4A | 119.0 | C15—C14—H14A | 120.5 |
| C4—C5—C6 | 118.9 (4) | C13—C14—H14A | 120.5 |
| C4—C5—H5A | 120.6 | C14—C15—C16 | 122.2 (4) |
| C6—C5—H5A | 120.6 | C14—C15—N2 | 118.6 (4) |
| C5—C6—C1 | 118.1 (4) | C16—C15—N2 | 119.2 (4) |
| C5—C6—C7 | 135.3 (4) | C15—C16—C17 | 118.2 (4) |
| C1—C6—C7 | 106.5 (3) | C15—C16—H16A | 120.9 |
| C8—C7—C6 | 108.6 (3) | C17—C16—H16A | 120.9 |
| C8—C7—H7A | 125.7 | C12—C17—C16 | 121.0 (4) |
| C6—C7—H7A | 125.7 | C12—C17—H17A | 119.5 |
| C7—C8—N1 | 107.8 (3) | C16—C17—H17A | 119.5 |
| C7—C8—C9 | 130.0 (4) | ||
| C8—N1—C1—C2 | 179.9 (4) | C8—C9—C10—C11 | 175.8 (3) |
| C8—N1—C1—C6 | −0.6 (4) | C9—C10—C11—O1 | −21.9 (6) |
| N1—C1—C2—C3 | −179.9 (4) | C9—C10—C11—C12 | 159.5 (4) |
| C6—C1—C2—C3 | 0.6 (6) | O1—C11—C12—C17 | −13.1 (5) |
| C1—C2—C3—C4 | 0.2 (6) | C10—C11—C12—C17 | 165.5 (3) |
| C2—C3—C4—C5 | 0.0 (7) | O1—C11—C12—C13 | 167.7 (4) |
| C3—C4—C5—C6 | −1.2 (6) | C10—C11—C12—C13 | −13.7 (5) |
| C4—C5—C6—C1 | 1.9 (6) | C17—C12—C13—C14 | −0.9 (6) |
| C4—C5—C6—C7 | 179.8 (4) | C11—C12—C13—C14 | 178.3 (4) |
| N1—C1—C6—C5 | 178.7 (3) | C12—C13—C14—C15 | −0.4 (6) |
| C2—C1—C6—C5 | −1.7 (6) | C13—C14—C15—C16 | 1.3 (6) |
| N1—C1—C6—C7 | 0.2 (4) | C13—C14—C15—N2 | −177.3 (4) |
| C2—C1—C6—C7 | 179.8 (3) | O3—N2—C15—C14 | −176.8 (4) |
| C5—C6—C7—C8 | −177.8 (4) | O2—N2—C15—C14 | 2.8 (6) |
| C1—C6—C7—C8 | 0.3 (4) | O3—N2—C15—C16 | 4.5 (6) |
| C6—C7—C8—N1 | −0.6 (4) | O2—N2—C15—C16 | −176.0 (4) |
| C6—C7—C8—C9 | 177.6 (4) | C14—C15—C16—C17 | −0.9 (6) |
| C1—N1—C8—C7 | 0.7 (4) | N2—C15—C16—C17 | 177.8 (4) |
| C1—N1—C8—C9 | −177.7 (3) | C13—C12—C17—C16 | 1.4 (6) |
| C7—C8—C9—C10 | 176.4 (4) | C11—C12—C17—C16 | −177.9 (4) |
| N1—C8—C9—C10 | −5.5 (6) | C15—C16—C17—C12 | −0.5 (6) |
| H··· | ||||
| O1 | 0.88 (4) | 1.86 (4) | 2.723 (4) | 171 (4) |
| N1—H1 | 0.87 (3) | 2.06 (3) | 2.923 (4) | 170 (3) |
| C4—H4 | 0.93 | 2.60 | 3.405 (6) | 146 |
| C9—H9 | 0.93 | 2.87 | 3.518 (4) | 127 |