Literature DB >> 30443379

Crystal structures and Hirshfeld surfaces of four meth-oxy-benzaldehyde oxime derivatives, 2-MeO-XC6H3C=NOH (X = H and 2-, 3- and 4-MeO): different conformations and hydrogen-bonding patterns.

Ligia R Gomes1,2, Marcus V N de Souza3, Cristiane F Da Costa3, James L Wardell3,4, John Nicolson Low4.   

Abstract

The crystal structures of four (E)-meth-oxy-benzaldehyde oxime derivatives, namely (2-meth-oxy-benzaldehyde oxime, 1, 2,3-di-meth-oxy-benzaldehyde oxime, 2, 4-di-meth-oxy-benzaldehyde oxime, 3, and 2,5-di-meth-oxy-benzaldehyde oxime, 4, are discussed. The arrangements of the 2-meth-oxy group and the H atom of the oxime unit are s-cis in compounds 1-3, but in both independent mol-ecules of compound 4, the arrangements are s-trans. There is also a difference in the conformation of the two mol-ecules in 4, involving the orientations of the 2- and 5-meth-oxy groups. The primary inter-molecular O-H(oxime)⋯O(hy-droxy) hydrogen bonds generate C(3) chains in 1 and 2. In contrast, in compound 3, the O-H(oxime)⋯O(hy-droxy) hydrogen bonds generate symmetric R 2 2(6) dimers. A more complex dimer is generated in 4 from the O-H(oxime)⋯O(hy-droxy) and C-H(2-meth-oxy)⋯O(hy-droxy) hydrogen bonds. In all cases, further inter-actions, C-H⋯O and C-H⋯π or π-π, generate three-dimensional arrays. Hirshfeld surface and fingerprint analyses are discussed.

Entities:  

Keywords:  crystal structure; hydrogen bonding; oxime derivative

Year:  2018        PMID: 30443379      PMCID: PMC6218896          DOI: 10.1107/S2056989018014020

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Chemical context

In the plant kingdom, oximes play a vital role in metabolism (Sørensen et al., 2018 ▸). Aldoximes, RCH=NOH, are found in many biologically active compounds (Abele et al., 2008 ▸; Nikitjuka & Jirgensons, 2014 ▸), having a diverse range of uses including as anti-tumour agents (Martínez-Pascual et al., 2017 ▸; Qin et al., 2017 ▸; Canario et al., 2018 ▸; Huang et al., 2018 ▸), acaricidal and insecticidal agents (Dai et al., 2017 ▸), thymidine phospho­rylase inhibitors (Zhao et al., 2018 ▸), anti-microbial agents (Yadav et al., 2017 ▸), bacteriocides (Kozlowska et al., 2017 ▸), anti-inflammatory agents (Mohassab et al. 2017 ▸), and in the treatment of nerve-gas poisoning (Lorke et al., 2008 ▸; Voicu et al., 2010 ▸; Katalinić et al., 2017 ▸; Radić et al., 2013 ▸). Benzaldehyde oximes, ArCH=NOH, with their –CH=N—OH functional group are ideally arranged for classical O—H⋯O and/or O—H⋯N hydrogen bonding. The last survey of the classical hydrogen-bonding patterns in benzaldehyde oximes reported in 2010 (Low et al., 2010 ▸) confirmed that the most frequently found arrangements, with the exception of salicylaldoxines, are (6) dimers and C(3) chains, Fig. 1 ▸. Aakeröy et al. (2013 ▸) reported the percentages of (6) dimers and C(3) chains found in non-salicylaldoxine to be ca 72 and 24%, respectively – similar percentages can be derived from a recent survey of the Cambridge Structural Database (CSD Version 5.39, August 2018 update; Groom et al., 2016 ▸). Hydrogen bonds are considered to be the strongest and most directional of inter­molecular inter­actions in mol­ecules (Etter, 1990 ▸) and thus play the major roles in determining the overall supra­molecular structures. However, the involvement of weaker inter­molecular inter­actions, such as C—H⋯O hydrogen bonds, π–π inter­actions and inter­actions involving the substituents, can have a significant influence on the supra­molecular arrays generated. In a continuation of recent studies on aldoximes (Low et al. 2018 ▸; Gomes et al., 2018 ▸), we have determined the crystal structures of four meth­oxy­benzaldehyde derivatives, namely 2-MeO-X-C6H3CH=NOH where X = H in 1, X = 3-MeO in 2, X = 4-MeO in 3 and X = 5-MeO in 4. The aim of the study was to further investigate the occurrence of (6) dimers and C(3) chains in a series of related compounds.
Figure 1

Illustrations of the C(3) chains and (6) dimers formed by oximes

Structural commentary

There are no unusual features in the mol­ecular structures. Compound 1 crystallizes in the ortho­rhom­bic space group Pna21 with one mol­ecule in the asymmetric unit (Fig. 2 ▸), compound 2 crystallizes in the ortho­rhom­bic space group P212121 with one mol­ecule in the asymmetric unit (Fig. 3 ▸), compound 3 crystallizes in the triclinic space group P with one mol­ecule in the asymmetric unit (Fig. 4 ▸), and compound 4 crystallizes in the monoclinic space group, P21/c with two independent mol­ecules, Mol A and Mol B, in the asymmetric unit (Fig. 5 ▸). The geometry about the oxime moiety in all mol­ecules is (E). In compounds 1–3, the 2-meth­oxy group and the hydrogen of the oxime moiety have an s-cis arrangement. In contrast, in both mol­ecules of compound 4, the 2-meth­oxy group and the hydrogen atom of the oxime moiety have an s-trans arrangement. The s-trans arrangement of the 2-alk­oxy group and hydrogen atom of the oxime units in compound 4 is very much rarer than the s-cis arrangement found in compounds 1–3 and other non-salicylaldoximes. A search of the Cambridge Structural Database (CSD Version 5.39, August 2018 update; Groom et al., 2016 ▸) revealed that only salicyl­aldoximes and 2-alk­oxy­benzaldehyde oxime (E)-2-({2-[(E)-(hy­droxy­imino)­meth­yl]phen­oxy}meth­yl)-3-p-tolyl­acryl­o­nitrile (LAQRIG; Suresh et al. 2012 ▸) had this s-trans arrangement. In contrast, the isomer 2-({2-[(hy­droxy­imino)meth­yl]phen­oxy}meth­yl)-3-(2-methyl­phen­yl)acrylo­nitrile (GARNEU; Govindan et al., 2012a ▸) and some similar compounds such as (E)-2-({2-[(E)-(hy­droxy­imino)­meth­yl]phen­oxy}meth­yl)-3-phenyl­acrylo­nitrile (LAQRUS; Govindan et al., 2012b ▸) had the s-cis arrangement.
Figure 2

Atom arrangements and numbering scheme for compound 1. Displacement ellipsoids are drawn at the 50% probability level.

Figure 3

Atom arrangements and numbering system for compound 2. Displacement ellipsoids are drawn at the 50% probability level.

Figure 4

Atom arrangements and numbering system for compound 3. Displacement ellipsoids are drawn at the 50% probability level.

Figure 5

Atom arrangements and numbering system for the two independent mol­ecules, Mol A and Mol B, of compound 4. Displacement ellipsoids are drawn at the 50% probability level.

There is a conformational difference between the two independent mol­ecules Mol A and Mol B of compound 4. This difference is in the orientation of the two meth­oxy groups, see Fig. 5 ▸: in Mol A the orientation is s-trans and in Mol B, it is s-cis. As expected for a 1,2,3-tris­ubstituted benzene derivative, compound 4 is the least planar of the four oxime derivatives, with the 2-meth­oxy substituent furthest out of the plane of the attached phenyl group, see Table 1 ▸.
Table 1

Distances (Å) of OMe C atoms and oxime N and O atoms from benzene ring mean plane in compounds 1–4

Atom 1 2 3 4 Mol A 4 Mol B
C210.086 (3)−1.140 (4)0.195 (1)0.121 (1)0.059 (1)
C31−0.011 (4)
C410.081 (1)
C510.033 (1)0.061 (1)
N120.061 (2)0.259 (3)−0.177 (1)0.264 (1)−0.020 (1)
O13−0.009 (2)−0.027 (3)0.051 (1)0.242 (1)0.010 (1)

Supra­molecular features

Hydrogen bonding

In the crystal of 1, mol­ecules are primarily linked by strong O13—H13⋯N12i hydrogen bonds (Table 2 ▸), forming C(3) chains, illustrated in Fig. 6 ▸. Also present in compound 1 are two weaker hydrogen bonds, namely, C3—H3⋯O13ii and C21—H21C⋯O13iii, as well as a weak π–π stacking inter­action [CgCg iv = 4.025 (2) Å: slippage 2.105 Å: symmetry code; x, y, z − 1]. These three inter­actions generate the mol­ecular arrangement shown in Fig. 7 ▸. The C3—H3⋯O13ii hydrogen bonds generate C7 chains in the c-axis direction, while the C21—H21C⋯O13iii hydrogen bonds form C(8) spiral chains along the a-axis direction: together these hydrogen bonds form (22) rings. The tilted π–π stacks propagate in the c-axis direction. The involvement of the weaker C3—H3⋯O13ii, C21—H21C⋯O13iii and π–π inter­actions, along with the stronger O13—H13 ⋯N12i hydrogen bonds, creates the three-dimensional structure for 1.
Table 2

Hydrogen-bond geometry (Å, °) for 1

D—H⋯A D—HH⋯A DA D—H⋯A
O13—H13⋯N12i 0.841.932.764 (2)170
C3—H3⋯O13ii 0.952.503.442 (2)174
C21—H21C⋯O13iii 0.982.573.506 (3)160

Symmetry codes: (i) ; (ii) ; (iii) .

Figure 6

Compound 1. Part of a C(3) chain formed by O13—H13⋯·N12 hydrogen bonds (dashed lines; see Table 2 ▸).

Figure 7

Compound 1. Part of the arrangement generated from the combination of hydrogen bonds and π–π inter­actions (dashed lines; see Table 2 ▸).

As in 1, mol­ecules of 2 are primarily linked by strong O13—H13 ⋯N12i hydrogen bonds (Table 3 ▸), forming C(3) chains: as such chains are very similar to those in compound 1, see Fig. 6 ▸, an illustration has not been provided for the C(3) chain in compound 2. Other inter­molecular inter­actions in 2 are the weaker C21—H21B⋯O31iii and C31—H31B⋯O13iv hydrogen bonds and a C31—H31C⋯Cg1v inter­action involving the C1–C6 ring. These three inter­actions combine to form the arrangement illustrated in Fig. 8 ▸. The C21—H21B⋯O31iii hydrogen bonds on their own generate C(6) chains, which propagate in the a-axis direction while the C31—H31B⋯O13iv hydrogen bonds generate spiral C(9) chains in the b-axis direction. Together these hydrogen bonds generate a network of (26) rings. The C31—H31C⋯Cg1v inter­actions lead to chains along the a-axis direction. The involvement of the weaker C21—H21B⋯O31iii, C31—H31B⋯O13iv C and C—H⋯π inter­actions, along with the stronger O13—H13 ⋯N12i hydrogen bonds, creates a three-dimensional structure for 2. C4—H4⋯O12ii hydrogen bonds also occur.
Table 3

Hydrogen-bond geometry (Å, °) for 2

Cg1 is the centroid of the C1–C6 ring.

D—H⋯A D—HH⋯A DA D—H⋯A
O13—H13⋯N12i 0.97 (4)1.87 (5)2.805 (4)161 (4)
C4—H4⋯O21ii 0.952.633.284 (4)126
C21—H21B⋯O31iii 0.982.543.323 (5)136
C31—H31B⋯O13iv 0.982.513.448 (5)161
C31—H31CCg1v 0.982.733.599 (5)148

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

Figure 8

Compound 2. Part of the arrangement generated form C21—H21B⋯O31, C31—H31B⋯O13 and π–π inter­actions (dashed lines; see Table 3 ▸).

In compound 3, (6) dimers are generated from strong O13—H13⋯N12i hydrogen bonds (Table 4 ▸), as illustrated in Fig. 9 ▸. Linkages of these (6) dimers by weaker C41—H41A(meth­oxy)⋯O13ii hydrogen bonds provide a two-mol­ecule-wide ribbon. Within the ribbons are (22) rings as well as the (6) rings. An additional inter­action in 3 is the C41—H41C⋯Cg1iii inter­action, which generates a tilted ladder assembly, propagating in the a-axis direction, with the (6) rings acting as the rungs and the C41—H41C⋯Cg1iii inter­actions as the supports.
Table 4

Hydrogen-bond geometry (Å, °) for 3

Cg1 is the centroid of the C1–C6 ring.

D—H⋯A D—HH⋯A DA D—H⋯A
O13—H13⋯N12i 0.893 (18)1.995 (19)2.8124 (13)151.5 (15)
C41—H41A⋯O13ii 0.982.633.0680 (15)107
C41—H41CCg1iii 0.982.603.4479 (13)144

Symmetry codes: (i) ; (ii) ; (iii) .

Figure 9

Compound 3. A two-mol­ecule-wide ribbon generated from linking the (6) dimers, formed by pairs of strong O13—H13—N12 hydrogen bonds and by weaker C41—H41A⋯O13 hydrogen bonds (dashed lines; see Table 4 ▸).

In compound 4, each of the two independent mol­ecules forms symmetric dimers, see Fig. 10 ▸. These are generated from combinations of O113—H113⋯N112i and O113—H113⋯O121i hydrogen bonds (Table 5 ▸) for Mol A and O213—H213⋯N212ii and O213—H213⋯O221ii hydrogen bonds for Mol B. In each case, the dimers contain three rings, two (6) and one (6). There are short N⋯N distances across the (6) dimer rings, 2.8595 (12) Å for MolA and 2.8956 (12) Å for Mol B, each being less than the sum of the van der Waals radius (3.10 Å) for two N atoms.
Figure 10

Compound 4. Symmetric dimers of (a) Mol A and (b) Mol B. Hydrogen bonds (see Table 5 ▸) are shown as dashed lines.

Table 5

Hydrogen-bond geometry (Å, °) for 4

Cg1 and Cg2 are the centroids of the C11–C16 and C21–C26 rings, respectively.

D—H⋯A D—HH⋯A DA D—H⋯A
O113—H113⋯O121i 0.875 (16)2.247 (15)2.8944 (9)130.7 (12)
O113—H113⋯N112i 0.875 (16)1.965 (16)2.7567 (10)149.9 (13)
O213—H213⋯O221ii 0.877 (15)2.204 (15)2.8758 (9)133.1 (12)
O213—H213⋯N212ii 0.877 (15)2.034 (15)2.8160 (10)147.9 (13)
C111—H111⋯O2510.952.463.2458 (11)140
C121—H12C⋯N212iii 0.982.533.4400 (13)155
C151—H15A⋯O113iv 0.982.503.3947 (11)152
C14—H14⋯Cg2iii 0.952.983.6656 (9)130
C151—H15BCg20.982.723.5973 (10)149
C24—H24⋯Cg1v 0.952.673.4281 (10)137
C211—H211⋯Cg1vi 0.952.783.6272 (9)149

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

The links between the two different dimers of 4 are provided by a number of C—H⋯O and C—H⋯π inter­actions, listed in Table 5 ▸. Fig. 11 ▸ restricts the contacts to just the C—H⋯O hydrogen bonds, namely C121—H12C⋯N212iii, C111—H111⋯O251 and C151—H15A⋯O113iv. To facilitate the viewing of the connection in Fig. 11 ▸, the two different dimers are drawn in different colours.
Figure 11

Compound 4. Symmetric dimers of Mol A (green) and Mol B (blue). Inter­molecular inter­actions (see Table 5 ▸) are shown as dashed lines.

Hirshfeld surface analysis

Hirshfeld surfaces (Spackman & Jayatilaka, 2009 ▸) and two-dimensional fingerprint (FP) plots (Spackman & McKinnon, 2002 ▸), provide complementary information concerning the inter­molecular inter­actions discussed above. The analyses were generated using Crystal Explorer3.1 (Wolff et al., 2012 ▸). The Hirshfeld surfaces mapped over d norm for 1–4 are illus­trated in Fig. 12 ▸. The red areas on the surfaces correspond to close contacts. The fingerprint plots are shown in Fig. 13 ▸. In all of the FP plots, the pair of spikes pointing south-west relate to the N—H contacts, which in compounds 1 and 2 are involved in the C(3) chains, while in compounds 3 and 4, they are responsible for the creation of the dimers. In compound 3, the fins ending at d e, d i = 1.9,1.1 Å are due to C(π)⋯H/C(π)⋯H contacts. The FP plots for Mol A and Mol B of compound 4 are asymmetric because of the different inter­actions of each mol­ecule. The double wings in the FP plot for Mol A in the second quadrant are complementary to those displayed in the fourth quadrant by MolB and relate to C⋯H close contacts connecting the two mol­ecules. The spike ending at d i, d e = 1.1 Å in Mol A is due to H⋯H contacts.
Figure 12

Hirshfeld surfaces for compounds 1–4. In each case, the inter­actions related to the red areas are designated.

Figure 13

Fingerprint plots for compounds 1–4.

The percentages of the various atom–atom contacts, derived from the fingerprint plots, for the four compounds are shown in Table 6 ▸. The fact that compound 1 has only one meth­oxy group while the isomers, 2–4, have two is reflected in the greater percentages of contacts involving the oxygen close contacts. The C(3)-chain-forming compounds 1 and 2 show higher percentages of H⋯H and CC contacts, but a lower percentage of H⋯C/C⋯H contacts, than the dimer-forming compounds 3 and 4.
Table 6

Percentages of atom–atom contacts for compounds 1, 2, 3 and 4 (Mol A and Mol B)

Compound 1 2 3 4 Mol A 4 Mol B
H⋯H52.749.143.741.538.6
H⋯O/O⋯H16.222.523.424.926.3
H⋯C/C⋯H11.314.520.422.725.9
H⋯N/N⋯H8.16.68.49.08.1
C⋯C7.93.51.30.10.1
O⋯C/C⋯O2.12.02.61.50.8
N⋯O/O⋯N
N⋯C/C⋯N1.61.8
O⋯O0.40.2

Database survey

A search of the Cambridge Structural Database survey (CSD Version 5.39, August 2018 update; Groom et al., 2016 ▸) revealed compounds similar to 2 and 3. The classical hydrogen bonds in 3,5-di­meth­oxy­benzene oxime generate C(3) chains (VUZJAC; Dong et al., 2010 ▸). No benzene oxime derivative with only meth­oxy substituents has been reported in the database to form an (6) or related dimer. The structure has been reported of 3,4,5-tri­meth­oxy­benzene oxime (MEQDAO; Chang, 2006 ▸) in which classical hydrogen bonds, formed between the oxime unit and the 4- and 5-meth­oxy moieties, but not the 2-meth­oxy group, result in the formation of a tetra­mer. The water mol­ecule in 3,4.5-tri­meth­oxy­benzene monohydrate (HESWUY; Priya et al., 2006 ▸) is strongly involved in the hydrogen-bonding arrangements. There are 376 structures, (411 fragments) in the CSD database with oxime (6) dimers in which the N⋯N distance across the ring is less than or equal to 3.10 Å, the sum of two N-atom van der Waals radii. The H⋯O hydrogen-bond distance range was restricted to 1.739–2.285 Å to exclude improbable O⋯H distances based on a statistical analysis in Mercury (Macrae et al., 2006 ▸). The N⋯N distances range from 2.727 to 3.097 Å with a mean value of 2.987 Å. There are 27 structures within the range 2.838 to 2.909 Å in which our values of 2.8595 (12) Å for MolA and 2.8956 (12) Å for MolB of compound4 lie. Only single-crystal organic compounds were searched for with no limit on the R factor.

Synthesis and crystallization

The title compounds were prepared from hy­droxy­amine and the corresponding benzaldehyde in methanol in the presence of potassium carbonate and were recrystallized from methanol solutions, m.p. = 364–365 K for compound 1, 371–373 K for 2, 378–380 K for 3 and 370–371 K for 4.

Refinement details

Crystal data, data collection and structure refinement details are summarized in Table 7 ▸. All hy­droxy hydrogen atoms were refined isotropically. C-bound H atoms were refined as riding with C—H = 0.95–0.98Å and U iso(H) = 1.2–1.5U eq(C).
Table 7

Experimental details

  1 2 3 4
Crystal data
Chemical formulaC8H9NO2 C9H11NO3 C9H11NO3 C9H11NO3
M r 151.16181.19181.19181.19
Crystal system, space groupOrthorhombic, P n a21 Orthorhombic, P212121 Triclinic, P Monoclinic, P21/c
Temperature (K)100100100100
a, b, c (Å)11.1719 (2), 16.4260 (3), 4.0249 (1)4.6775 (2), 13.0996 (5), 14.1984 (5)4.9441 (2), 8.2188 (4), 12.1308 (3)7.6480 (1), 21.3380 (4), 10.9421 (2)
α, β, γ (°)90, 90, 9090, 90, 90108.849 (3), 92.288 (3), 106.273 (4)90, 90.555 (2), 90
V3)738.61 (3)869.98 (6)443.17 (3)1785.59 (5)
Z 4428
Radiation typeCu KαCu KαCu KαMo Kα
μ (mm−1)0.820.870.860.10
Crystal size (mm)0.05 × 0.05 × 0.030.30 × 0.05 × 0.020.20 × 0.10 × 0.050.20 × 0.15 × 0.13
 
Data collection
DiffractometerRigaku 007HF equipped with Varimax confocal mirrors and an AFC11 goniometer and HyPix 6000 detectorRigaku 007HF equipped with Varimax confocal mirrors and an AFC11 goniometer and HyPix 6000 detectorRigaku 007HF equipped with Varimax confocal mirrors and an AFC11 goniometer and HyPix 6000 detectorRigaku FRE+ equipped with VHF Varimax confocal mirrors and an AFC12 goniometer and HyPix 6000 detector
Absorption correctionMulti-scan (CrysAlis PRO; Rigaku OD, 2017)Multi-scan (CrysAlis PRO; Rigaku OD, 2017)Multi-scan (CrysAlis PRO; Rigaku OD, 2017)Multi-scan (CrysAlis PRO; Rigaku OD, 2017)
T min, T max 0.848, 1.0000.507, 1.0000.802, 1.0000.935, 1.000
No. of measured, independent and observed [I > 2σ(I)] reflections12857, 1345, 13257835, 1596, 13717618, 1594, 146238753, 4082, 3761
R int 0.0380.0950.0330.020
(sin θ/λ)max−1)0.6020.6020.6020.649
 
Refinement
R[F 2 > 2σ(F 2)], wR(F 2), S 0.033, 0.088, 1.080.058, 0.151, 1.040.035, 0.101, 0.880.031, 0.086, 1.06
No. of reflections1345159615944082
No. of parameters102124124247
No. of restraints1000
H-atom treatmentH-atom parameters constrainedH atoms treated by a mixture of independent and constrained refinementH atoms treated by a mixture of independent and constrained refinementH atoms treated by a mixture of independent and constrained refinement
Δρmax, Δρmin (e Å−3)0.17, −0.160.35, −0.200.20, −0.190.32, −0.19
Absolute structureRefined as a perfect inversion twin.Flack x determined using 474 quotients [(I +)−(I )]/[(I +)+(I )] (Parsons et al., 2013)
Absolute structure parameter0.50.2 (3)

Computer programs: CrysAlis PRO (Rigaku OD, 2017 ▸), OSCAIL (McArdle et al., 2004 ▸), SHELXT (Sheldrick, 2015a ▸), ShelXle (Hübschle et al., 2011 ▸), SHELXL (Sheldrick, 2015b ▸), Mercury (Macrae et al., 2006 ▸) and PLATON (Spek, 2009 ▸).

Crystal structure: contains datablock(s) 1, 2, 3, 4, global. DOI: 10.1107/S2056989018014020/qm2129sup1.cif Structure factors: contains datablock(s) 1. DOI: 10.1107/S2056989018014020/qm21291sup2.hkl Structure factors: contains datablock(s) 2. DOI: 10.1107/S2056989018014020/qm21292sup3.hkl Structure factors: contains datablock(s) 3. DOI: 10.1107/S2056989018014020/qm21293sup4.hkl Structure factors: contains datablock(s) 4. DOI: 10.1107/S2056989018014020/qm21294sup5.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989018014020/qm21291sup6.cml Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989018014020/qm21292sup7.cml Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989018014020/qm21293sup8.cml Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989018014020/qm21294sup9.cml CCDC references: 1871165, 1871164, 1871163, 1871162 Additional supporting information: crystallographic information; 3D view; checkCIF report
C8H9NO2Dx = 1.359 Mg m3
Mr = 151.16Cu Kα radiation, λ = 1.54178 Å
Orthorhombic, Pna21Cell parameters from 7376 reflections
a = 11.1719 (2) Åθ = 2.7–70.0°
b = 16.4260 (3) ŵ = 0.82 mm1
c = 4.0249 (1) ÅT = 100 K
V = 738.61 (3) Å3Block, colourless
Z = 40.05 × 0.05 × 0.03 mm
F(000) = 320
Rigaku 007HF equipped with Varimax confocal mirrors and an AFC11 goniometer and HyPix 6000 detector diffractometer1345 independent reflections
Radiation source: Rotating anode, Rigaku 007 HF1325 reflections with I > 2σ(I)
Detector resolution: 10 pixels mm-1Rint = 0.038
profile data from ω–scansθmax = 68.2°, θmin = 4.8°
Absorption correction: multi-scan (CrysAlis PRO; Rigaku OD, 2017)h = −13→13
Tmin = 0.848, Tmax = 1.000k = −19→19
12857 measured reflectionsl = −4→4
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.033w = 1/[σ2(Fo2) + (0.0559P)2 + 0.1277P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.088(Δ/σ)max < 0.001
S = 1.08Δρmax = 0.17 e Å3
1345 reflectionsΔρmin = −0.16 e Å3
102 parametersAbsolute structure: Refined as a perfect inversion twin.
1 restraintAbsolute structure parameter: 0.5
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refined as a 2-component perfect inversion twin.
xyzUiso*/Ueq
O130.45979 (12)0.42019 (8)−0.4095 (4)0.0311 (4)
H130.4437920.464123−0.5065950.047*
O210.69333 (12)0.21322 (8)0.0350 (4)0.0303 (4)
N120.56325 (15)0.43011 (9)−0.2166 (5)0.0265 (4)
C10.72029 (18)0.35490 (12)0.0488 (5)0.0260 (5)
C20.76289 (18)0.27720 (11)0.1386 (6)0.0266 (5)
C30.86797 (18)0.26830 (12)0.3172 (6)0.0296 (5)
H30.8959870.2155710.3751320.036*
C40.93229 (19)0.33707 (13)0.4113 (6)0.0316 (5)
H41.0041940.3311840.5350450.038*
C50.89200 (18)0.41434 (12)0.3255 (6)0.0310 (5)
H50.9361690.4611410.3903550.037*
C60.78780 (18)0.42272 (12)0.1462 (6)0.0296 (5)
H60.7610620.4756740.0870810.035*
C110.61087 (18)0.36135 (11)−0.1461 (6)0.0275 (5)
H110.5736090.312951−0.2235530.033*
C210.7290 (2)0.13337 (11)0.1388 (7)0.0319 (5)
H21A0.6683560.0937250.0695000.048*
H21B0.7369390.1322170.3812310.048*
H21C0.8059630.1195700.0366700.048*
U11U22U33U12U13U23
O130.0346 (7)0.0199 (6)0.0389 (9)−0.0001 (6)−0.0067 (6)0.0040 (6)
O210.0346 (7)0.0172 (7)0.0391 (9)0.0000 (5)−0.0025 (7)0.0018 (6)
N120.0300 (8)0.0215 (8)0.0279 (9)0.0012 (6)0.0017 (7)−0.0006 (7)
C10.0310 (10)0.0206 (9)0.0264 (11)0.0008 (7)0.0041 (9)−0.0005 (8)
C20.0323 (9)0.0194 (9)0.0281 (11)−0.0011 (7)0.0048 (9)−0.0007 (8)
C30.0348 (10)0.0230 (9)0.0310 (11)0.0017 (8)0.0036 (9)0.0015 (9)
C40.0316 (10)0.0307 (11)0.0324 (12)0.0001 (8)0.0009 (9)0.0006 (9)
C50.0350 (11)0.0243 (10)0.0337 (12)−0.0043 (7)0.0015 (9)−0.0025 (10)
C60.0362 (11)0.0203 (9)0.0322 (11)0.0003 (8)0.0023 (9)−0.0007 (9)
C110.0352 (11)0.0181 (8)0.0292 (11)−0.0008 (7)0.0030 (9)−0.0011 (8)
C210.0390 (11)0.0158 (9)0.0408 (12)0.0028 (7)−0.0004 (10)0.0028 (9)
O13—N121.402 (2)C3—H30.9500
O13—H130.8400C4—C51.390 (3)
O21—C21.372 (2)C4—H40.9500
O21—C211.433 (2)C5—C61.377 (3)
N12—C111.280 (3)C5—H50.9500
C1—C61.401 (3)C6—H60.9500
C1—C21.409 (3)C11—H110.9500
C1—C111.456 (3)C21—H21A0.9800
C2—C31.384 (3)C21—H21B0.9800
C3—C41.391 (3)C21—H21C0.9800
N12—O13—H13109.5C6—C5—C4119.69 (18)
C2—O21—C21117.07 (16)C6—C5—H5120.2
C11—N12—O13111.27 (15)C4—C5—H5120.2
C6—C1—C2117.80 (19)C5—C6—C1121.50 (18)
C6—C1—C11123.00 (17)C5—C6—H6119.3
C2—C1—C11119.18 (17)C1—C6—H6119.3
O21—C2—C3123.87 (17)N12—C11—C1122.16 (18)
O21—C2—C1115.11 (18)N12—C11—H11118.9
C3—C2—C1121.01 (17)C1—C11—H11118.9
C2—C3—C4119.58 (18)O21—C21—H21A109.5
C2—C3—H3120.2O21—C21—H21B109.5
C4—C3—H3120.2H21A—C21—H21B109.5
C5—C4—C3120.4 (2)O21—C21—H21C109.5
C5—C4—H4119.8H21A—C21—H21C109.5
C3—C4—H4119.8H21B—C21—H21C109.5
C21—O21—C2—C34.2 (3)C2—C3—C4—C5−0.4 (3)
C21—O21—C2—C1−176.10 (18)C3—C4—C5—C60.0 (3)
C6—C1—C2—O21−179.70 (18)C4—C5—C6—C10.4 (3)
C11—C1—C2—O21−1.2 (3)C2—C1—C6—C5−0.4 (3)
C6—C1—C2—C30.0 (3)C11—C1—C6—C5−178.8 (2)
C11—C1—C2—C3178.5 (2)O13—N12—C11—C1179.25 (17)
O21—C2—C3—C4−179.9 (2)C6—C1—C11—N12−6.4 (3)
C1—C2—C3—C40.4 (3)C2—C1—C11—N12175.2 (2)
D—H···AD—HH···AD···AD—H···A
O13—H13···N12i0.841.932.764 (2)170
C3—H3···O13ii0.952.503.442 (2)174
C21—H21C···O13iii0.982.573.506 (3)160
C9H11NO3Dx = 1.383 Mg m3
Mr = 181.19Cu Kα radiation, λ = 1.54178 Å
Orthorhombic, P212121Cell parameters from 2093 reflections
a = 4.6775 (2) Åθ = 4.6–67.5°
b = 13.0996 (5) ŵ = 0.87 mm1
c = 14.1984 (5) ÅT = 100 K
V = 869.98 (6) Å3Needle, colourless
Z = 40.30 × 0.05 × 0.02 mm
F(000) = 384
Rigaku 007HF equipped with Varimax confocal mirrors and an AFC11 goniometer and HyPix 6000 detector diffractometer1596 independent reflections
Radiation source: Rotating anode, Rigaku 007 HF1371 reflections with I > 2σ(I)
Detector resolution: 10 pixels mm-1Rint = 0.095
profile data from ω–scansθmax = 68.2°, θmin = 4.6°
Absorption correction: multi-scan (CrysAlis PRO; Rigaku OD, 2017)h = −5→5
Tmin = 0.507, Tmax = 1.000k = −15→15
7835 measured reflectionsl = −17→16
Refinement on F2Hydrogen site location: mixed
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.058w = 1/[σ2(Fo2) + (0.1064P)2] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.151(Δ/σ)max < 0.001
S = 1.03Δρmax = 0.35 e Å3
1596 reflectionsΔρmin = −0.20 e Å3
124 parametersAbsolute structure: Flack x determined using 474 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons et al., 2013)
0 restraintsAbsolute structure parameter: 0.2 (3)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
xyzUiso*/Ueq
O13−0.3161 (6)0.81289 (19)0.42174 (19)0.0376 (7)
H13−0.382 (10)0.799 (3)0.485 (3)0.045 (12)*
O210.3629 (5)0.73710 (18)0.18056 (18)0.0331 (6)
O310.6683 (6)0.57595 (18)0.1198 (2)0.0370 (7)
N12−0.1250 (7)0.7305 (2)0.4137 (2)0.0328 (7)
C10.1671 (8)0.6379 (3)0.3072 (3)0.0311 (8)
C20.3440 (8)0.6450 (2)0.2283 (3)0.0309 (8)
C30.5135 (8)0.5622 (2)0.1997 (3)0.0315 (8)
C40.5069 (9)0.4725 (3)0.2525 (2)0.0331 (9)
H40.6206190.4157560.2344310.040*
C50.3334 (9)0.4664 (3)0.3318 (3)0.0344 (8)
H50.3325760.4054720.3680390.041*
C60.1631 (9)0.5468 (3)0.3588 (3)0.0338 (9)
H60.0428590.5404870.4124570.041*
C11−0.0229 (8)0.7232 (2)0.3309 (3)0.0332 (8)
H11−0.0696380.7728070.2845410.040*
C210.2048 (9)0.7399 (3)0.0942 (3)0.0374 (9)
H21A0.2303100.8065980.0640990.056*
H21B0.0015420.7288270.1074100.056*
H21C0.2744810.6861650.0520040.056*
C310.8511 (10)0.4933 (3)0.0919 (3)0.0390 (10)
H31A0.9522420.5118080.0338930.059*
H31B0.7355780.4320800.0807810.059*
H31C0.9902970.4796500.1419050.059*
U11U22U33U12U13U23
O130.0411 (16)0.0292 (13)0.0423 (16)0.0088 (12)0.0053 (13)0.0027 (11)
O210.0339 (14)0.0250 (12)0.0405 (14)−0.0027 (11)0.0009 (12)0.0020 (10)
O310.0340 (14)0.0291 (12)0.0478 (15)0.0042 (11)0.0072 (13)−0.0015 (11)
N120.0294 (16)0.0244 (14)0.0446 (18)0.0025 (13)−0.0001 (15)−0.0001 (12)
C10.0277 (18)0.0277 (17)0.038 (2)−0.0008 (15)−0.0021 (17)−0.0004 (14)
C20.0297 (17)0.0244 (17)0.0387 (19)−0.0018 (15)−0.0012 (17)0.0017 (14)
C30.0285 (18)0.0262 (16)0.040 (2)0.0016 (15)0.0002 (16)−0.0029 (15)
C40.0315 (18)0.0236 (17)0.044 (2)0.0017 (16)−0.0025 (17)−0.0036 (14)
C50.036 (2)0.0286 (17)0.039 (2)0.0000 (16)−0.0054 (18)0.0019 (15)
C60.034 (2)0.0298 (18)0.038 (2)0.0001 (17)−0.0004 (17)0.0019 (15)
C110.0353 (19)0.0238 (16)0.040 (2)0.0010 (17)0.0001 (18)0.0007 (15)
C210.040 (2)0.0324 (18)0.040 (2)−0.0016 (17)0.0010 (17)0.0037 (15)
C310.035 (2)0.0296 (18)0.052 (2)0.0034 (16)0.009 (2)−0.0068 (16)
O13—N121.405 (4)C4—C51.389 (5)
O13—H130.97 (4)C4—H40.9500
O21—C21.386 (4)C5—C61.375 (5)
O21—C211.432 (4)C5—H50.9500
O31—C31.357 (4)C6—H60.9500
O31—C311.435 (4)C11—H110.9500
N12—C111.273 (5)C21—H21A0.9800
C1—C21.396 (5)C21—H21B0.9800
C1—C61.401 (5)C21—H21C0.9800
C1—C111.467 (5)C31—H31A0.9800
C2—C31.404 (5)C31—H31B0.9800
C3—C41.394 (5)C31—H31C0.9800
N12—O13—H1397 (3)C5—C6—C1119.9 (4)
C2—O21—C21114.1 (3)C5—C6—H6120.1
C3—O31—C31116.6 (3)C1—C6—H6120.1
C11—N12—O13111.8 (3)N12—C11—C1119.7 (3)
C2—C1—C6119.0 (3)N12—C11—H11120.1
C2—C1—C11119.5 (3)C1—C11—H11120.1
C6—C1—C11121.4 (3)O21—C21—H21A109.5
O21—C2—C1119.2 (3)O21—C21—H21B109.5
O21—C2—C3119.7 (3)H21A—C21—H21B109.5
C1—C2—C3121.0 (3)O21—C21—H21C109.5
O31—C3—C4125.0 (3)H21A—C21—H21C109.5
O31—C3—C2116.1 (3)H21B—C21—H21C109.5
C4—C3—C2118.9 (3)O31—C31—H31A109.5
C5—C4—C3119.8 (3)O31—C31—H31B109.5
C5—C4—H4120.1H31A—C31—H31B109.5
C3—C4—H4120.1O31—C31—H31C109.5
C6—C5—C4121.4 (3)H31A—C31—H31C109.5
C6—C5—H5119.3H31B—C31—H31C109.5
C4—C5—H5119.3
C21—O21—C2—C1−103.3 (4)C1—C2—C3—C4−1.2 (5)
C21—O21—C2—C380.0 (4)O31—C3—C4—C5−178.1 (4)
C6—C1—C2—O21−175.9 (3)C2—C3—C4—C50.2 (5)
C11—C1—C2—O217.9 (5)C3—C4—C5—C61.1 (6)
C6—C1—C2—C30.8 (5)C4—C5—C6—C1−1.4 (6)
C11—C1—C2—C3−175.4 (4)C2—C1—C6—C50.5 (6)
C31—O31—C3—C4−4.0 (5)C11—C1—C6—C5176.6 (3)
C31—O31—C3—C2177.6 (4)O13—N12—C11—C1−176.2 (3)
O21—C2—C3—O31−6.0 (5)C2—C1—C11—N12−161.0 (3)
C1—C2—C3—O31177.3 (3)C6—C1—C11—N1222.8 (6)
O21—C2—C3—C4175.5 (3)
D—H···AD—HH···AD···AD—H···A
O13—H13···N12i0.97 (4)1.87 (5)2.805 (4)161 (4)
C4—H4···O21ii0.952.633.284 (4)126
C21—H21B···O31iii0.982.543.323 (5)136
C31—H31B···O13iv0.982.513.448 (5)161
C31—H31C···Cg1v0.982.733.599 (5)148
C9H11NO3Z = 2
Mr = 181.19F(000) = 192
Triclinic, P1Dx = 1.358 Mg m3
a = 4.9441 (2) ÅCu Kα radiation, λ = 1.54178 Å
b = 8.2188 (4) ÅCell parameters from 3758 reflections
c = 12.1308 (3) Åθ = 3.9–69.9°
α = 108.849 (3)°µ = 0.86 mm1
β = 92.288 (3)°T = 100 K
γ = 106.273 (4)°Block, colourless
V = 443.17 (3) Å30.20 × 0.10 × 0.05 mm
Rigaku 007HF equipped with Varimax confocal mirrors and an AFC11 goniometer and HyPix 6000 detector diffractometer1594 independent reflections
Radiation source: Rotating anode, Rigaku 007 HF1462 reflections with I > 2σ(I)
Detector resolution: 10 pixels mm-1Rint = 0.033
profile data from ω–scansθmax = 68.2°, θmin = 3.9°
Absorption correction: multi-scan (CrysAlis PRO; Rigaku OD, 2017)h = −5→5
Tmin = 0.802, Tmax = 1.000k = −9→9
7618 measured reflectionsl = −14→13
Refinement on F20 restraints
Least-squares matrix: fullHydrogen site location: mixed
R[F2 > 2σ(F2)] = 0.035H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.101w = 1/[σ2(Fo2) + (0.0775P)2 + 0.1273P] where P = (Fo2 + 2Fc2)/3
S = 0.88(Δ/σ)max < 0.001
1594 reflectionsΔρmax = 0.20 e Å3
124 parametersΔρmin = −0.19 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
xyzUiso*/Ueq
O13−0.22417 (16)0.06653 (12)0.08642 (7)0.0311 (2)
O210.29524 (16)0.56560 (10)0.41358 (7)0.0261 (2)
O411.14895 (16)0.88605 (11)0.31075 (7)0.0273 (2)
N120.05891 (19)0.17759 (13)0.09919 (8)0.0255 (3)
C10.3951 (2)0.45758 (15)0.22073 (10)0.0231 (3)
C20.4791 (2)0.58860 (15)0.33490 (9)0.0228 (3)
C30.7331 (2)0.72870 (15)0.36234 (9)0.0237 (3)
H30.7890710.8151150.4398460.028*
C40.9063 (2)0.74213 (15)0.27541 (10)0.0238 (3)
C50.8276 (2)0.61490 (15)0.16177 (10)0.0247 (3)
H50.9453800.6240260.1026650.030*
C60.5741 (2)0.47475 (15)0.13657 (10)0.0245 (3)
H60.5207580.3874950.0592940.029*
C110.1194 (2)0.31641 (15)0.19252 (10)0.0242 (3)
H11−0.0173160.3286240.2449520.029*
C210.3513 (2)0.70704 (15)0.52560 (9)0.0281 (3)
H21A0.1965090.6790990.5710950.042*
H21B0.3645390.8216050.5142020.042*
H21C0.5313980.7173690.5682890.042*
C411.3260 (2)0.90933 (16)0.22272 (10)0.0278 (3)
H41A1.4903511.0181550.2577040.042*
H41B1.2163910.9220540.1585800.042*
H41C1.3921550.8036960.1916900.042*
H13−0.235 (4)−0.031 (2)0.0244 (16)0.049 (5)*
U11U22U33U12U13U23
O130.0234 (4)0.0320 (5)0.0287 (5)−0.0008 (3)0.0076 (3)0.0062 (4)
O210.0251 (4)0.0298 (4)0.0202 (4)0.0037 (3)0.0072 (3)0.0081 (3)
O410.0227 (4)0.0309 (5)0.0241 (4)0.0022 (3)0.0068 (3)0.0089 (3)
N120.0212 (5)0.0278 (5)0.0252 (5)0.0032 (4)0.0044 (4)0.0100 (4)
C10.0229 (6)0.0248 (6)0.0230 (6)0.0079 (4)0.0033 (4)0.0099 (4)
C20.0222 (5)0.0285 (6)0.0216 (6)0.0092 (4)0.0060 (4)0.0123 (5)
C30.0235 (6)0.0279 (6)0.0196 (5)0.0072 (5)0.0034 (4)0.0086 (4)
C40.0198 (6)0.0269 (6)0.0257 (6)0.0063 (4)0.0029 (4)0.0114 (5)
C50.0236 (6)0.0306 (6)0.0229 (6)0.0100 (5)0.0077 (4)0.0113 (5)
C60.0252 (6)0.0271 (6)0.0208 (5)0.0083 (5)0.0036 (4)0.0077 (4)
C110.0242 (6)0.0288 (6)0.0221 (6)0.0080 (5)0.0058 (4)0.0118 (4)
C210.0295 (6)0.0324 (6)0.0195 (6)0.0065 (5)0.0077 (4)0.0075 (5)
C410.0250 (6)0.0333 (6)0.0258 (6)0.0059 (5)0.0085 (4)0.0131 (5)
O13—N121.4112 (12)C3—H30.9500
O13—H130.893 (18)C4—C51.3939 (16)
O21—C21.3648 (13)C5—C61.3869 (16)
O21—C211.4294 (13)C5—H50.9500
O41—C41.3632 (13)C6—H60.9500
O41—C411.4339 (13)C11—H110.9500
N12—C111.2728 (15)C21—H21A0.9800
C1—C61.3931 (16)C21—H21B0.9800
C1—C21.4107 (15)C21—H21C0.9800
C1—C111.4634 (15)C41—H41A0.9800
C2—C31.3864 (16)C41—H41B0.9800
C3—C41.3971 (16)C41—H41C0.9800
N12—O13—H13103.5 (11)C1—C6—C5122.23 (10)
C2—O21—C21117.44 (8)C1—C6—H6118.9
C4—O41—C41116.82 (9)C5—C6—H6118.9
C11—N12—O13111.40 (9)N12—C11—C1121.37 (10)
C6—C1—C2117.84 (10)N12—C11—H11119.3
C6—C1—C11122.31 (10)C1—C11—H11119.3
C2—C1—C11119.74 (10)O21—C21—H21A109.5
O21—C2—C3123.79 (10)O21—C21—H21B109.5
O21—C2—C1115.34 (10)H21A—C21—H21B109.5
C3—C2—C1120.88 (10)O21—C21—H21C109.5
C2—C3—C4119.64 (10)H21A—C21—H21C109.5
C2—C3—H3120.2H21B—C21—H21C109.5
C4—C3—H3120.2O41—C41—H41A109.5
O41—C4—C3115.11 (10)O41—C41—H41B109.5
O41—C4—C5124.27 (10)H41A—C41—H41B109.5
C3—C4—C5120.62 (10)O41—C41—H41C109.5
C6—C5—C4118.78 (10)H41A—C41—H41C109.5
C6—C5—H5120.6H41B—C41—H41C109.5
C4—C5—H5120.6
C21—O21—C2—C38.36 (15)C2—C3—C4—O41179.03 (9)
C21—O21—C2—C1−171.96 (9)C2—C3—C4—C5−0.70 (17)
C6—C1—C2—O21179.72 (9)O41—C4—C5—C6−179.69 (9)
C11—C1—C2—O213.38 (15)C3—C4—C5—C60.01 (17)
C6—C1—C2—C3−0.59 (16)C2—C1—C6—C5−0.11 (17)
C11—C1—C2—C3−176.93 (9)C11—C1—C6—C5176.12 (9)
O21—C2—C3—C4−179.34 (9)C4—C5—C6—C10.40 (17)
C1—C2—C3—C41.00 (16)O13—N12—C11—C1−175.95 (9)
C41—O41—C4—C3−177.21 (9)C6—C1—C11—N1217.32 (17)
C41—O41—C4—C52.51 (16)C2—C1—C11—N12−166.51 (10)
D—H···AD—HH···AD···AD—H···A
O13—H13···N12i0.893 (18)1.995 (19)2.8124 (13)151.5 (15)
C41—H41A···O13ii0.982.633.0680 (15)107
C41—H41C···Cg1iii0.982.603.4479 (13)144
C9H11NO3F(000) = 768
Mr = 181.19Dx = 1.348 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71075 Å
a = 7.6480 (1) ÅCell parameters from 21005 reflections
b = 21.3380 (4) Åθ = 2.1–32.1°
c = 10.9421 (2) ŵ = 0.10 mm1
β = 90.555 (2)°T = 100 K
V = 1785.59 (5) Å3Block, colourless
Z = 80.20 × 0.15 × 0.13 mm
Rigaku FRE+ equipped with VHF Varimax confocal mirrors and an AFC12 goniometer and HyPix 6000 detector diffractometer4082 independent reflections
Radiation source: Rotating Anode, Rigaku FRE+3761 reflections with I > 2σ(I)
Confocal mirrors, VHF Varimax monochromatorRint = 0.020
Detector resolution: 10 pixels mm-1θmax = 27.5°, θmin = 1.9°
profile data from ω–scansh = −9→9
Absorption correction: multi-scan (CrysAlis PRO; Rigaku OD, 2017)k = −27→27
Tmin = 0.935, Tmax = 1.000l = −14→14
38753 measured reflections
Refinement on F20 restraints
Least-squares matrix: fullHydrogen site location: mixed
R[F2 > 2σ(F2)] = 0.031H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.086w = 1/[σ2(Fo2) + (0.0477P)2 + 0.5056P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max = 0.001
4082 reflectionsΔρmax = 0.32 e Å3
247 parametersΔρmin = −0.19 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
xyzUiso*/Ueq
O1211.05737 (9)0.46081 (3)0.23188 (6)0.01640 (15)
O2210.33772 (9)0.09728 (3)0.32374 (6)0.01705 (15)
O1510.88735 (9)0.21358 (3)0.13343 (6)0.01629 (14)
O2130.63115 (9)0.03239 (3)0.60782 (6)0.01852 (15)
H2130.6028 (19)−0.0064 (7)0.5898 (13)0.036 (4)*
O2510.47197 (9)0.34248 (3)0.46029 (6)0.01810 (15)
O1130.84907 (9)0.45697 (3)0.56752 (6)0.01890 (15)
H1130.905 (2)0.4914 (7)0.5868 (13)0.036 (4)*
N1120.92134 (10)0.44408 (4)0.45300 (7)0.01543 (16)
N2120.53640 (10)0.06589 (4)0.51894 (7)0.01507 (16)
C110.92057 (11)0.36690 (4)0.29191 (8)0.01265 (17)
C121.01564 (11)0.40037 (4)0.20387 (8)0.01345 (17)
C131.06269 (12)0.37068 (4)0.09534 (8)0.01520 (18)
H131.1257900.3932010.0352470.018*
C141.01792 (11)0.30839 (4)0.07452 (8)0.01529 (18)
H141.0519350.2885080.0007890.018*
C150.92359 (11)0.27498 (4)0.16103 (8)0.01354 (17)
C160.87441 (11)0.30442 (4)0.26854 (8)0.01321 (17)
H160.8084990.2818870.3271250.016*
C210.47308 (11)0.17198 (4)0.45403 (8)0.01312 (17)
C220.36691 (11)0.15892 (4)0.35049 (8)0.01327 (17)
C230.29914 (11)0.20820 (4)0.28236 (8)0.01541 (18)
H230.2294760.1994640.2120530.018*
C240.33136 (12)0.27053 (4)0.31516 (8)0.01597 (18)
H240.2842020.3037070.2672400.019*
C250.43233 (11)0.28369 (4)0.41782 (8)0.01448 (18)
C260.50301 (11)0.23437 (4)0.48551 (8)0.01430 (17)
H260.5736340.2435370.5551380.017*
C1110.86582 (11)0.39220 (4)0.40987 (8)0.01383 (17)
H1110.7847860.3687510.4566490.017*
C1211.16522 (14)0.49466 (5)0.14906 (9)0.0233 (2)
H12A1.1886990.5365660.1819700.035*
H12B1.1051180.4983880.0698910.035*
H12C1.2758960.4722470.1384640.035*
C1510.79088 (13)0.17920 (4)0.22231 (9)0.01864 (19)
H15A0.7692660.1366290.1921620.028*
H15B0.6790030.2001810.2368460.028*
H15C0.8582160.1772250.2988680.028*
C2110.55768 (11)0.12487 (4)0.53198 (8)0.01470 (18)
H2110.6327150.1390160.5959430.018*
C2210.24158 (15)0.08339 (5)0.21389 (9)0.0238 (2)
H22A0.2330900.0378650.2036790.036*
H22B0.3020420.1015300.1436980.036*
H22C0.1238970.1012960.2192230.036*
C2510.41248 (14)0.39453 (4)0.38939 (9)0.0225 (2)
H25A0.4538660.4335610.4269910.034*
H25B0.2843840.3945570.3861710.034*
H25C0.4583450.3912380.3063190.034*
U11U22U33U12U13U23
O1210.0203 (3)0.0116 (3)0.0174 (3)−0.0029 (2)0.0052 (2)−0.0001 (2)
O2210.0220 (3)0.0133 (3)0.0157 (3)−0.0018 (2)−0.0063 (2)−0.0012 (2)
O1510.0188 (3)0.0128 (3)0.0173 (3)−0.0015 (2)0.0015 (2)−0.0033 (2)
O2130.0230 (3)0.0136 (3)0.0189 (3)0.0017 (3)−0.0077 (3)0.0021 (2)
O2510.0208 (3)0.0111 (3)0.0223 (3)−0.0006 (2)−0.0048 (3)0.0004 (2)
O1130.0263 (4)0.0160 (3)0.0145 (3)−0.0053 (3)0.0077 (3)−0.0043 (2)
N1120.0186 (4)0.0148 (4)0.0129 (3)−0.0001 (3)0.0039 (3)−0.0015 (3)
N2120.0165 (4)0.0146 (4)0.0140 (4)0.0020 (3)−0.0027 (3)0.0020 (3)
C110.0114 (4)0.0128 (4)0.0137 (4)0.0010 (3)−0.0013 (3)−0.0004 (3)
C120.0123 (4)0.0122 (4)0.0158 (4)0.0007 (3)−0.0006 (3)0.0003 (3)
C130.0151 (4)0.0163 (4)0.0142 (4)0.0007 (3)0.0015 (3)0.0019 (3)
C140.0152 (4)0.0173 (4)0.0133 (4)0.0021 (3)0.0003 (3)−0.0024 (3)
C150.0116 (4)0.0126 (4)0.0164 (4)0.0013 (3)−0.0030 (3)−0.0015 (3)
C160.0117 (4)0.0133 (4)0.0146 (4)0.0001 (3)−0.0004 (3)0.0010 (3)
C210.0125 (4)0.0141 (4)0.0128 (4)−0.0005 (3)0.0012 (3)0.0007 (3)
C220.0126 (4)0.0133 (4)0.0139 (4)−0.0012 (3)0.0012 (3)−0.0007 (3)
C230.0140 (4)0.0175 (4)0.0147 (4)0.0001 (3)−0.0017 (3)−0.0001 (3)
C240.0145 (4)0.0153 (4)0.0180 (4)0.0020 (3)−0.0010 (3)0.0026 (3)
C250.0128 (4)0.0127 (4)0.0179 (4)−0.0009 (3)0.0017 (3)−0.0003 (3)
C260.0133 (4)0.0159 (4)0.0137 (4)−0.0010 (3)−0.0008 (3)−0.0002 (3)
C1110.0139 (4)0.0135 (4)0.0141 (4)−0.0004 (3)0.0016 (3)0.0010 (3)
C1210.0312 (5)0.0160 (4)0.0228 (5)−0.0063 (4)0.0096 (4)0.0015 (4)
C1510.0245 (5)0.0131 (4)0.0183 (4)−0.0024 (3)0.0002 (4)−0.0005 (3)
C2110.0145 (4)0.0160 (4)0.0135 (4)−0.0011 (3)−0.0018 (3)−0.0005 (3)
C2210.0321 (5)0.0188 (4)0.0204 (5)−0.0043 (4)−0.0119 (4)−0.0020 (4)
C2510.0280 (5)0.0131 (4)0.0263 (5)0.0018 (4)−0.0035 (4)0.0027 (4)
O121—C121.3628 (10)C21—C261.3935 (12)
O121—C1211.4275 (11)C21—C221.4151 (12)
O221—C221.3653 (10)C21—C2111.4651 (12)
O221—C2211.4339 (11)C22—C231.3866 (12)
O151—C151.3721 (10)C23—C241.3988 (12)
O151—C1511.4291 (11)C23—H230.9500
O213—N2121.4029 (9)C24—C251.3858 (12)
O213—H2130.877 (15)C24—H240.9500
O251—C251.3706 (10)C25—C261.3929 (12)
O251—C2511.4268 (11)C26—H260.9500
O113—N1121.4017 (9)C111—H1110.9500
O113—H1130.875 (16)C121—H12A0.9800
N112—C1111.2747 (11)C121—H12B0.9800
N212—C2111.2767 (12)C121—H12C0.9800
C11—C161.4020 (12)C151—H15A0.9800
C11—C121.4072 (12)C151—H15B0.9800
C11—C1111.4639 (12)C151—H15C0.9800
C12—C131.3962 (12)C211—H2110.9500
C13—C141.3908 (12)C221—H22A0.9800
C13—H130.9500C221—H22B0.9800
C14—C151.3921 (12)C221—H22C0.9800
C14—H140.9500C251—H25A0.9800
C15—C161.3887 (12)C251—H25B0.9800
C16—H160.9500C251—H25C0.9800
C12—O121—C121118.13 (7)C23—C24—H24120.1
C22—O221—C221117.40 (7)O251—C25—C24125.45 (8)
C15—O151—C151116.42 (7)O251—C25—C26115.32 (8)
N212—O213—H213101.5 (10)C24—C25—C26119.23 (8)
C25—O251—C251117.38 (7)C25—C26—C21121.89 (8)
N112—O113—H113100.6 (10)C25—C26—H26119.1
C111—N112—O113111.63 (7)C21—C26—H26119.1
C211—N212—O213111.12 (7)N112—C111—C11123.34 (8)
C16—C11—C12119.24 (8)N112—C111—H111118.3
C16—C11—C111115.96 (8)C11—C111—H111118.3
C12—C11—C111124.79 (8)O121—C121—H12A109.5
O121—C12—C13123.99 (8)O121—C121—H12B109.5
O121—C12—C11116.60 (8)H12A—C121—H12B109.5
C13—C12—C11119.41 (8)O121—C121—H12C109.5
C14—C13—C12120.53 (8)H12A—C121—H12C109.5
C14—C13—H13119.7H12B—C121—H12C109.5
C12—C13—H13119.7O151—C151—H15A109.5
C13—C14—C15120.42 (8)O151—C151—H15B109.5
C13—C14—H14119.8H15A—C151—H15B109.5
C15—C14—H14119.8O151—C151—H15C109.5
O151—C15—C16124.23 (8)H15A—C151—H15C109.5
O151—C15—C14116.36 (8)H15B—C151—H15C109.5
C16—C15—C14119.40 (8)N212—C211—C21123.80 (8)
C15—C16—C11120.99 (8)N212—C211—H211118.1
C15—C16—H16119.5C21—C211—H211118.1
C11—C16—H16119.5O221—C221—H22A109.5
C26—C21—C22118.53 (8)O221—C221—H22B109.5
C26—C21—C211116.18 (8)H22A—C221—H22B109.5
C22—C21—C211125.29 (8)O221—C221—H22C109.5
O221—C22—C23123.76 (8)H22A—C221—H22C109.5
O221—C22—C21116.92 (8)H22B—C221—H22C109.5
C23—C22—C21119.32 (8)O251—C251—H25A109.5
C22—C23—C24121.27 (8)O251—C251—H25B109.5
C22—C23—H23119.4H25A—C251—H25B109.5
C24—C23—H23119.4O251—C251—H25C109.5
C25—C24—C23119.74 (8)H25A—C251—H25C109.5
C25—C24—H24120.1H25B—C251—H25C109.5
C121—O121—C12—C13−4.21 (13)C211—C21—C22—O2211.91 (13)
C121—O121—C12—C11175.24 (8)C26—C21—C22—C231.31 (12)
C16—C11—C12—O121−179.74 (7)C211—C21—C22—C23−177.99 (8)
C111—C11—C12—O121−0.50 (13)O221—C22—C23—C24179.06 (8)
C16—C11—C12—C13−0.26 (13)C21—C22—C23—C24−1.05 (13)
C111—C11—C12—C13178.98 (8)C22—C23—C24—C25−0.22 (13)
O121—C12—C13—C14178.77 (8)C251—O251—C25—C24−3.63 (13)
C11—C12—C13—C14−0.67 (13)C251—O251—C25—C26175.86 (8)
C12—C13—C14—C150.80 (13)C23—C24—C25—O251−179.32 (8)
C151—O151—C15—C160.74 (12)C23—C24—C25—C261.21 (13)
C151—O151—C15—C14179.85 (8)O251—C25—C26—C21179.53 (8)
C13—C14—C15—O151−179.15 (8)C24—C25—C26—C21−0.94 (13)
C13—C14—C15—C160.01 (13)C22—C21—C26—C25−0.32 (13)
O151—C15—C16—C11178.13 (8)C211—C21—C26—C25179.03 (8)
C14—C15—C16—C11−0.95 (13)O113—N112—C111—C11−179.60 (8)
C12—C11—C16—C151.08 (13)C16—C11—C111—N112168.18 (8)
C111—C11—C16—C15−178.23 (8)C12—C11—C111—N112−11.08 (14)
C221—O221—C22—C234.54 (13)O213—N212—C211—C21−178.99 (8)
C221—O221—C22—C21−175.35 (8)C26—C21—C211—N212176.46 (8)
C26—C21—C22—O221−178.79 (8)C22—C21—C211—N212−4.24 (14)
D—H···AD—HH···AD···AD—H···A
O113—H113···O121i0.875 (16)2.247 (15)2.8944 (9)130.7 (12)
O113—H113···N112i0.875 (16)1.965 (16)2.7567 (10)149.9 (13)
O213—H213···O221ii0.877 (15)2.204 (15)2.8758 (9)133.1 (12)
O213—H213···N212ii0.877 (15)2.034 (15)2.8160 (10)147.9 (13)
C111—H111···O2510.952.463.2458 (11)140
C121—H12C···N212iii0.982.533.4400 (13)155
C151—H15A···O113iv0.982.503.3947 (11)152
C14—H14···Cg2iii0.952.983.6656 (9)130
C151—H15B···Cg20.982.723.5973 (10)149
C24—H24···Cg1v0.952.673.4281 (10)137
C211—H211···Cg1vi0.952.783.6272 (9)149
  20 in total

1.  Novel quinoline incorporating 1,2,4-triazole/oxime hybrids: Synthesis, molecular docking, anti-inflammatory, COX inhibition, ulceroginicity and histopathological investigations.

Authors:  Aliaa M Mohassab; Heba A Hassan; Dalia Abdelhamid; Mohamed Abdel-Aziz; Kevin N Dalby; Tamer S Kaoud
Journal:  Bioorg Chem       Date:  2017-09-30       Impact factor: 5.275

2.  Synthesis and biological evaluation of sulfur-containing shikonin oxime derivatives as potential antineoplastic agents.

Authors:  Guang Huang; Hui-Ran Zhao; Qing-Qing Meng; Qi-Jing Zhang; Jin-Yun Dong; Bao-Quan Zhu; Shao-Shun Li
Journal:  Eur J Med Chem       Date:  2017-11-14       Impact factor: 6.514

3.  Catalytic detoxification of nerve agent and pesticide organophosphates by butyrylcholinesterase assisted with non-pyridinium oximes.

Authors:  Zoran Radić; Trevor Dale; Zrinka Kovarik; Suzana Berend; Edzna Garcia; Limin Zhang; Gabriel Amitai; Carol Green; Božica Radić; Brendan M Duggan; Dariush Ajami; Julius Rebek; Palmer Taylor
Journal:  Biochem J       Date:  2013-02-15       Impact factor: 3.857

4.  Synthesis and biological evaluation of novel 1-(aryl-aldehyde-oxime)uracil derivatives as a new class of thymidine phosphorylase inhibitors.

Authors:  Shuyue Zhao; Ke Li; Yi Jin; Jun Lin
Journal:  Eur J Med Chem       Date:  2017-12-06       Impact factor: 6.514

Review 5.  Steroidal Oximes: Useful Compounds with Antitumor Activities.

Authors:  Catarina Canario; Samuel Silvestre; Amilcar Falcao; Gilberto Alves
Journal:  Curr Med Chem       Date:  2018-02-21       Impact factor: 4.530

Review 6.  Entry of oximes into the brain: a review.

Authors:  D E Lorke; H Kalasz; G A Petroianu; K Tekes
Journal:  Curr Med Chem       Date:  2008       Impact factor: 4.530

7.  SHELXT - integrated space-group and crystal-structure determination.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A Found Adv       Date:  2015-01-01       Impact factor: 2.290

8.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

9.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20

10.  The Cambridge Structural Database.

Authors:  Colin R Groom; Ian J Bruno; Matthew P Lightfoot; Suzanna C Ward
Journal:  Acta Crystallogr B Struct Sci Cryst Eng Mater       Date:  2016-04-01
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