Literature DB >> 30443376

Crystal structure of (E)-2,6-dimeth-oxy-4-{[(4-meth-oxy-phen-yl)imino]-meth-yl}phenol.

Md Serajul Haque Faizi1, Mohamad Nadeem Lone2, Necmi Dege3, Sergey Malinkin4, Tatiana Yu Sliva4.   

Abstract

In the title compound, C16H17NO4, the dihedral angle between benzene rings is 72.7 (2)°. The meth-oxy groups are rotated by 2.4 (2) and -4.9 (2) (benzil-idene moiety) and by 5.6 (3)° (aniline moiety) relative to the adjacent benzene ring. In the crystal, the mol-ecules are linked into chains along [101] through C-H⋯O and O-H⋯N hydrogen bonds.

Entities:  

Keywords:  4-hy­droxy-3,5-di­meth­oxy­benzaldehyde; 4-meth­oxy­aniline; crystal structure; syringaldehyde

Year:  2018        PMID: 30443376      PMCID: PMC6218903          DOI: 10.1107/S2056989018013713

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Chemical context

Syringaldehyde is a product of the catalytic decomposition of lignin (Crestini et al., 2010 ▸). Syringaldehyde is widely used as a mol­ecular marker to monitor pollution sources and detect the extent of combustion (Robinson et al., 2006 ▸). It is also known to be an anti­oxidant (Ibrahim et al., 2012 ▸), anti­cancer, anti-inflammatory (Duke, 2003 ▸) and anti­fungal agent (Gurpilhares et al., 2006 ▸). In addition, its Schiff bases are known to exhibit a wide range of biological activities (Shi & Zhou, 2011 ▸; da Silva et al., 2011 ▸).

Structural commentary

The mol­ecular structure of the title molecule is shown on Fig. 1 ▸. The compound has a trans-configuration of the C9=N1 double bond. The mol­ecule has a non-planar conformation with the two benzene rings forming a dihedral angle of 72.7 (2)°. The meth­oxy groups are almost co-planar with the planes of the adjacent aromatic rings [the C1—O1—C4—C3, C2—O3—C6—C7 and C16—O4—C13—C12 torsion angles are −4.9 (2), 2.4 (2) and 5.6 (3)°, respectively].
Figure 1

A view of the mol­ecular structure of the title compound, with the atom labelling. Displacement ellipsoids are drawn at the 40% probability level.

Supra­molecular features

In the crystal, the mol­ecules are connected via C7—H7⋯O2ii and O2—H2⋯N1i hydrogen bonding (Table 1 ▸), forming chains along the [101] direction (Fig. 2 ▸).
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O2—H2⋯N1i 0.822.212.9415 (18)149
C7—H7⋯O2ii 0.932.293.2043 (18)167

Symmetry codes: (i) ; (ii) .

Figure 2

A view along the a axis of the crystal packing. Dashed lines indicate hydrogen bonds (see Table 1 ▸).

Database survey

A search of the Cambridge Structural Database (CSD version 5.39, update of May 2018; Groom et al., 2016 ▸) revealed the structures of five similar Schiff bases based on p-meth­oxy­aniline and p-hy­droxy­benzaldehyde: 4-[(4-meth­oxy­phenyl­imino)­meth­yl]phenol, (I) (VUKDEK; Yeap et al., 1992 ▸), (E)-5-meth­oxy-2-[(4-meth­oxy­phenyl­imino)­meth­yl]phenol, (II) (NURNAQ; Sahin et al., 2010 ▸), 2-meth­oxy-4-{[(4-meth­oxy­phen­yl)imino]­meth­yl}phenol, (III) (MOTLIR; Singh et al., 2008 ▸), 2,6-di-tert-butyl-4-[(4-meth­oxy­phenyl­imino)­meth­yl]phenol, (IV) (WEFTEH; Xin et al., 2006 ▸) and 5-bromo-2-meth­oxy-4-{[(4-meth­oxy­phen­yl)imino]­meth­yl}phenol monohydrate, (V) (GAPFEK; Mao et al., 2012 ▸). The dihedral angle between the benzene rings in the title compound [72.7 (2)°] is larger than those in compounds (I), (III) and (IV) (49.75–53.63°). Compounds (II) and (V) are almost planar. In all of the compounds, the meth­oxy groups deviate from the plane of aromatic system. There are no C—H⋯π or π–π inter­actions in the crystal structure of the title compound, in contrast to what is observed for compounds (I), (IV) and (V).

Synthesis

4-Hy­droxy-3,5-di­meth­oxy­benzaldehyde (syringaldehyde) (0.05 mol) was added to a mixture of 50 ml of methanol and p-meth­oxy­aniline (PMA) (5 ml, 0.05 mol) and 50 ml of distilled water. The reaction mixture was taken in a clean 250 ml round-bottom flask and stirred well with a magnetic stirrer. It was then refluxed for 7 h. The dark-yellow product that formed was separated by filtration, dried under vacuum and recrystallized from methanol solution upon slow evaporation for two days (yield 65%, m.p. 353–357 K).

Refinement

Crystal data, data collection and structure refinement details are summarized in Table 2 ▸. H atoms were positioned geom­etrically and refined using a riding model: O—H = 0.82–0.96 Å and C—H = 0.93–0.96 Å with U iso(H) = 1.2U eq(C) or 1.5U eq(O, Cmethyl).
Table 2

Experimental details

Crystal data
Chemical formulaC16H17NO4
M r 287.30
Crystal system, space groupMonoclinic, P21/n
Temperature (K)296
a, b, c (Å)10.4996 (15), 12.4896 (18), 11.8128 (17)
β (°)107.936 (5)
V3)1473.8 (4)
Z 4
Radiation typeMo Kα
μ (mm−1)0.09
Crystal size (mm)0.45 × 0.33 × 0.21
 
Data collection
DiffractometerBruker APEXII CCD
No. of measured, independent and observed [I > 2σ(I)] reflections19289, 2887, 2306
R int 0.035
(sin θ/λ)max−1)0.617
 
Refinement
R[F 2 > 2σ(F 2)], wR(F 2), S 0.044, 0.116, 1.05
No. of reflections2887
No. of parameters194
H-atom treatmentH-atom parameters constrained
Δρmax, Δρmin (e Å−3)0.17, −0.21

Computer programs: APEX2 and SAINT (Bruker, 2004 ▸), SHELXS97 (Sheldrick 2008 ▸), SHELXL2017 (Sheldrick, 2015 ▸), ORTEP-3 for Windows (Farrugia, 2012 ▸), Mercury (Macrae et al., 2008 ▸) and PLATON (Spek, 2009 ▸).

Crystal structure: contains datablock(s) I. DOI: 10.1107/S2056989018013713/ld2146sup1.cif Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989018013713/ld2146Isup3.cml Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989018013713/ld2146Isup3.hkl CCDC reference: 1843910 Additional supporting information: crystallographic information; 3D view; checkCIF report
C16H17NO4F(000) = 608
Mr = 287.30Dx = 1.295 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
a = 10.4996 (15) ÅCell parameters from 6353 reflections
b = 12.4896 (18) Åθ = 2.3–28.3°
c = 11.8128 (17) ŵ = 0.09 mm1
β = 107.936 (5)°T = 296 K
V = 1473.8 (4) Å3Prism, colorless
Z = 40.45 × 0.33 × 0.21 mm
Bruker APEXII CCD diffractometerRint = 0.035
φ and ω scansθmax = 26.0°, θmin = 2.3°
19289 measured reflectionsh = −12→12
2887 independent reflectionsk = −15→15
2306 reflections with I > 2σ(I)l = −14→14
Refinement on F20 restraints
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.044H-atom parameters constrained
wR(F2) = 0.116w = 1/[σ2(Fo2) + (0.0509P)2 + 0.4295P] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max < 0.001
2887 reflectionsΔρmax = 0.17 e Å3
194 parametersΔρmin = −0.20 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
xyzUiso*/Ueq
O20.34000 (12)0.73324 (9)0.04196 (10)0.0465 (3)
H20.3470120.7976330.0560370.070*
O30.52685 (12)0.84064 (9)0.20703 (10)0.0473 (3)
O10.32775 (12)0.52385 (9)0.03728 (11)0.0530 (4)
O41.04377 (13)0.24711 (10)0.85736 (10)0.0524 (3)
N10.76944 (13)0.53851 (10)0.50837 (11)0.0388 (3)
C100.83876 (15)0.46251 (12)0.59633 (13)0.0350 (4)
C150.93325 (16)0.39274 (12)0.57930 (14)0.0369 (4)
H150.9519740.3928590.5073040.044*
C80.61237 (15)0.56465 (13)0.31098 (13)0.0355 (4)
C40.42672 (15)0.56804 (13)0.12973 (13)0.0371 (4)
C60.53028 (15)0.73189 (12)0.21930 (13)0.0344 (4)
C141.00014 (16)0.32282 (12)0.66827 (14)0.0384 (4)
H141.0649570.2773610.6562910.046*
C70.61974 (15)0.67549 (13)0.30970 (13)0.0361 (4)
H70.6844720.7114720.3693030.043*
C90.69704 (15)0.50052 (13)0.40957 (14)0.0377 (4)
H90.6978780.4267530.3991200.045*
C50.43155 (15)0.67913 (13)0.13033 (13)0.0345 (4)
C30.51728 (16)0.51059 (13)0.21959 (14)0.0386 (4)
H30.5147390.4361510.2190400.046*
C130.97179 (16)0.31969 (13)0.77481 (14)0.0380 (4)
C110.81296 (18)0.46051 (15)0.70406 (15)0.0486 (5)
H110.7513850.5084580.7174900.058*
C120.87678 (18)0.38867 (16)0.79243 (16)0.0505 (5)
H120.8558310.3868150.8633780.061*
C20.6266 (2)0.90036 (14)0.29204 (16)0.0546 (5)
H2B0.6159060.9750790.2723120.082*
H2C0.7136150.8771110.2915960.082*
H2D0.6178360.8893020.3697130.082*
C10.3232 (2)0.41090 (15)0.02729 (18)0.0603 (5)
H1A0.2557520.390654−0.0449460.090*
H1B0.3021100.3807130.0940940.090*
H1C0.4087030.3847130.0259630.090*
C161.0104 (2)0.2356 (2)0.96441 (19)0.0743 (7)
H16A0.9184090.2142200.9459950.111*
H16B1.0233570.3027051.0060810.111*
H16C1.0667510.1821521.0135490.111*
U11U22U33U12U13U23
O20.0477 (7)0.0351 (6)0.0389 (6)0.0019 (5)−0.0128 (5)0.0021 (5)
O30.0525 (7)0.0317 (6)0.0402 (6)−0.0019 (5)−0.0114 (5)0.0026 (5)
O10.0521 (7)0.0372 (7)0.0488 (7)−0.0005 (5)−0.0152 (6)−0.0056 (5)
O40.0602 (8)0.0525 (8)0.0453 (7)0.0195 (6)0.0174 (6)0.0221 (6)
N10.0403 (7)0.0353 (7)0.0342 (7)0.0050 (6)0.0017 (6)0.0049 (6)
C100.0353 (8)0.0315 (8)0.0324 (8)−0.0008 (6)0.0019 (6)0.0039 (6)
C150.0442 (9)0.0333 (8)0.0314 (8)0.0013 (7)0.0091 (7)0.0009 (6)
C80.0328 (8)0.0371 (8)0.0322 (8)0.0034 (6)0.0036 (6)0.0025 (6)
C40.0341 (8)0.0375 (9)0.0337 (8)−0.0001 (7)0.0016 (6)−0.0034 (6)
C60.0354 (8)0.0323 (8)0.0308 (8)−0.0002 (6)0.0034 (6)0.0008 (6)
C140.0418 (9)0.0317 (8)0.0413 (9)0.0055 (7)0.0121 (7)0.0022 (7)
C70.0339 (8)0.0380 (9)0.0291 (8)−0.0018 (7)−0.0011 (6)−0.0006 (6)
C90.0368 (8)0.0333 (8)0.0389 (9)0.0028 (7)0.0056 (7)0.0049 (7)
C50.0319 (8)0.0373 (9)0.0285 (8)0.0033 (6)0.0007 (6)0.0030 (6)
C30.0402 (9)0.0314 (8)0.0394 (9)0.0030 (7)0.0052 (7)0.0017 (7)
C130.0378 (9)0.0348 (9)0.0380 (9)0.0031 (7)0.0066 (7)0.0080 (7)
C110.0460 (10)0.0548 (11)0.0458 (10)0.0201 (8)0.0156 (8)0.0111 (8)
C120.0529 (11)0.0624 (12)0.0400 (9)0.0154 (9)0.0198 (8)0.0145 (8)
C20.0591 (12)0.0363 (10)0.0509 (11)−0.0115 (8)−0.0089 (9)0.0027 (8)
C10.0658 (13)0.0427 (11)0.0568 (11)−0.0089 (9)−0.0042 (10)−0.0113 (9)
C160.0816 (16)0.0896 (17)0.0569 (13)0.0299 (13)0.0291 (11)0.0395 (12)
O1—C2i3.159 (2)C6—C71.379 (2)
O2—C51.3610 (17)C6—C51.394 (2)
O2—H20.8200C14—C131.380 (2)
O3—C61.3652 (19)C14—H140.9300
O3—C21.4193 (19)C7—H70.9300
O1—C41.3704 (18)C9—H90.9300
O1—C11.415 (2)C3—H30.9300
O4—C131.3748 (18)C13—C121.382 (2)
O4—C161.420 (2)C11—C121.383 (2)
N1—C91.2722 (19)C11—H110.9300
N1—C101.4299 (19)C12—H120.9300
C10—C111.380 (2)C2—H2B0.9600
C10—C151.381 (2)C2—H2C0.9600
C15—C141.381 (2)C2—H2D0.9600
C15—H150.9300C1—H1A0.9600
C8—C71.387 (2)C1—H1B0.9600
C8—C31.398 (2)C1—H1C0.9600
C8—C91.466 (2)C16—H16A0.9600
C4—C31.387 (2)C16—H16B0.9600
C4—C51.388 (2)C16—H16C0.9600
C5—O2—H2109.5C4—C5—C6119.60 (13)
C6—O3—C2117.27 (12)C4—C3—C8119.96 (15)
C4—O1—C1117.75 (13)C4—C3—H3120.0
C13—O4—C16117.76 (14)C8—C3—H3120.0
C9—N1—C10116.47 (13)O4—C13—C14116.08 (14)
C11—C10—C15118.47 (14)O4—C13—C12124.69 (15)
C11—C10—N1118.78 (14)C14—C13—C12119.22 (14)
C15—C10—N1122.73 (14)C10—C11—C12121.36 (16)
C14—C15—C10120.54 (15)C10—C11—H11119.3
C14—C15—H15119.7C12—C11—H11119.3
C10—C15—H15119.7C13—C12—C11119.69 (16)
C7—C8—C3120.18 (14)C13—C12—H12120.2
C7—C8—C9122.12 (14)C11—C12—H12120.2
C3—C8—C9117.62 (14)O3—C2—H2B109.5
O1—C4—C3125.06 (15)O3—C2—H2C109.5
O1—C4—C5115.09 (13)H2B—C2—H2C109.5
C3—C4—C5119.85 (14)O3—C2—H2D109.5
O3—C6—C7125.44 (13)H2B—C2—H2D109.5
O3—C6—C5113.65 (13)H2C—C2—H2D109.5
C7—C6—C5120.91 (14)O1—C1—H1A109.5
C13—C14—C15120.67 (15)O1—C1—H1B109.5
C13—C14—H14119.7H1A—C1—H1B109.5
C15—C14—H14119.7O1—C1—H1C109.5
C6—C7—C8119.44 (14)H1A—C1—H1C109.5
C6—C7—H7120.3H1B—C1—H1C109.5
C8—C7—H7120.3O4—C16—H16A109.5
N1—C9—C8124.73 (15)O4—C16—H16B109.5
N1—C9—H9117.6H16A—C16—H16B109.5
C8—C9—H9117.6O4—C16—H16C109.5
O2—C5—C4118.44 (13)H16A—C16—H16C109.5
O2—C5—C6121.96 (14)H16B—C16—H16C109.5
C9—N1—C10—C11−120.05 (18)C3—C4—C5—C62.1 (2)
C9—N1—C10—C1561.7 (2)O3—C6—C5—O2−1.2 (2)
C11—C10—C15—C140.0 (2)C7—C6—C5—O2178.26 (15)
N1—C10—C15—C14178.20 (15)O3—C6—C5—C4177.70 (14)
C1—O1—C4—C3−4.9 (3)C7—C6—C5—C4−2.8 (2)
C1—O1—C4—C5175.89 (16)O1—C4—C3—C8−178.61 (15)
C2—O3—C6—C72.4 (2)C5—C4—C3—C80.5 (2)
C2—O3—C6—C5−178.17 (15)C7—C8—C3—C4−2.4 (2)
C10—C15—C14—C131.4 (2)C9—C8—C3—C4174.26 (15)
O3—C6—C7—C8−179.66 (15)C16—O4—C13—C14−175.25 (18)
C5—C6—C7—C80.9 (2)C16—O4—C13—C125.6 (3)
C3—C8—C7—C61.7 (2)C15—C14—C13—O4179.86 (15)
C9—C8—C7—C6−174.84 (15)C15—C14—C13—C12−1.0 (3)
C10—N1—C9—C8176.30 (14)C15—C10—C11—C12−1.8 (3)
C7—C8—C9—N110.4 (3)N1—C10—C11—C12179.89 (16)
C3—C8—C9—N1−166.23 (16)O4—C13—C12—C11178.25 (17)
O1—C4—C5—O20.2 (2)C14—C13—C12—C11−0.8 (3)
C3—C4—C5—O2−178.98 (14)C10—C11—C12—C132.2 (3)
O1—C4—C5—C6−178.72 (14)
D—H···AD—HH···AD···AD—H···A
O2—H2···N1i0.822.212.9415 (18)149
C7—H7···O2ii0.932.293.2043 (18)167
  7 in total

1.  Source apportionment of molecular markers and organic aerosol. 2. Biomass smoke.

Authors:  Allen L Robinson; R Subramanian; Neil M Donahue; Anna Bernardo-Bricker; Wolfgang F Rogge
Journal:  Environ Sci Technol       Date:  2006-12-15       Impact factor: 9.028

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Synthesis and evaluation of a class of new coumarin triazole derivatives as potential antimicrobial agents.

Authors:  Yuan Shi; Cheng-He Zhou
Journal:  Bioorg Med Chem Lett       Date:  2010-12-16       Impact factor: 2.823

4.  5-Bromo-2-meth-oxy-4-{[(4-meth-oxy-phen-yl)imino]-meth-yl}phenol monohydrate.

Authors:  Cheng-Gong Mao; Shuang-Shuang Wang; Deng-Cheng Su; Shao-Song Qian
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-01-07

5.  SHELXT - integrated space-group and crystal-structure determination.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A Found Adv       Date:  2015-01-01       Impact factor: 2.290

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20

7.  The Cambridge Structural Database.

Authors:  Colin R Groom; Ian J Bruno; Matthew P Lightfoot; Suzanna C Ward
Journal:  Acta Crystallogr B Struct Sci Cryst Eng Mater       Date:  2016-04-01
  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.