Literature DB >> 30430146

Evaluation of Trace Alignment Quality and its Application in Medical Process Mining.

Moliang Zhou1, Sen Yang1, Xinyu Li1, Shuyu Lv1, Shuhong Chen1, Ivan Marsic1, Richard Farneth2, Randall Burd2.   

Abstract

Trace alignment algorithms have been used in process mining for discovering the consensus treatment procedures and process deviations. Different alignment algorithms, however, may produce very different results. No widely-adopted method exists for evaluating the results of trace alignment. Existing reference-free evaluation methods cannot adequately and comprehensively assess the alignment quality. We analyzed and compared the existing evaluation methods, identifying their limitations, and introduced improvements in two reference-free evaluation methods. Our approach assesses the alignment result globally instead of locally, and therefore helps the algorithm to optimize overall alignment quality. We also introduced a novel metric to measure the alignment complexity, which can be used as a constraint on alignment algorithm optimization. We tested our evaluation methods on a trauma resuscitation dataset and provided the medical explanation of the activities and patterns identified as deviations using our proposed evaluation methods.

Entities:  

Keywords:  evaluation; process mining; trace alignment; trauma resuscitation

Year:  2017        PMID: 30430146      PMCID: PMC6231409          DOI: 10.1109/ICHI.2017.57

Source DB:  PubMed          Journal:  IEEE Int Conf Healthc Inform


  12 in total

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Authors:  J D Thompson; F Plewniak; O Poch
Journal:  Nucleic Acids Res       Date:  1999-07-01       Impact factor: 16.971

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Journal:  Proteins       Date:  2000-07-01

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Authors:  J D Thompson; F Plewniak; O Poch
Journal:  Bioinformatics       Date:  1999-01       Impact factor: 6.937

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Authors:  Robert C Edgar; Kimmen Sjölander
Journal:  Bioinformatics       Date:  2004-02-12       Impact factor: 6.937

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Authors:  C Sander; R Schneider
Journal:  Proteins       Date:  1991

6.  Workflow mining and outlier detection from clinical activity logs.

Authors:  L Bouarfa; J Dankelman
Journal:  J Biomed Inform       Date:  2012-08-19       Impact factor: 6.317

Review 7.  Process mining in healthcare: A literature review.

Authors:  Eric Rojas; Jorge Munoz-Gama; Marcos Sepúlveda; Daniel Capurro
Journal:  J Biomed Inform       Date:  2016-04-22       Impact factor: 6.317

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Authors:  S B Needleman; C D Wunsch
Journal:  J Mol Biol       Date:  1970-03       Impact factor: 5.469

9.  The alignment of sets of sequences and the construction of phyletic trees: an integrated method.

Authors:  P Hogeweg; B Hesper
Journal:  J Mol Evol       Date:  1984       Impact factor: 2.395

10.  M-Coffee: combining multiple sequence alignment methods with T-Coffee.

Authors:  Iain M Wallace; Orla O'Sullivan; Desmond G Higgins; Cedric Notredame
Journal:  Nucleic Acids Res       Date:  2006-03-23       Impact factor: 16.971

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  1 in total

1.  Process conformance is associated with successful first intubation attempt and lower odds of adverse events in a paediatric emergency setting.

Authors:  Karen J O'Connell; Sen Yang; Megan Cheng; Alexis B Sandler; Niall H Cochrane; JaeWon Yang; Rachel B Webman; Ivan Marsic; Randall Burd
Journal:  Emerg Med J       Date:  2019-07-18       Impact factor: 2.740

  1 in total

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