Literature DB >> 30430034

Prioritization of Candidate Genes for Congenital Diaphragmatic Hernia in a Critical Region on Chromosome 4p16 using a Machine-Learning Algorithm.

Danielle A Callaway1, Ian M Campbell2, Samantha R Stover3, Andres Hernandez-Garcia3, Shalini N Jhangiani3,4, Jaya Punetha3, Ingrid S Paine3, Jennifer E Posey3, Donna Muzny3,4, Kevin P Lally5, James R Lupski3,4,6, Chad A Shaw3, Caraciolo J Fernandes6, Daryl A Scott3,7.   

Abstract

Wolf-Hirschhorn syndrome (WHS) is caused by partial deletion of the short arm of chromosome 4 and is characterized by dysmorphic facies, congenital heart defects, intellectual/developmental disability, and increased risk for congenital diaphragmatic hernia (CDH). In this report, we describe a stillborn girl with WHS and a large CDH. A literature review revealed 15 cases of WHS with CDH, which overlap a 2.3-Mb CDH critical region. We applied a machine-learning algorithm that integrates large-scale genomic knowledge to genes within the 4p16.3 CDH critical region and identified FGFRL1 , CTBP1 , NSD2 , FGFR3 , CPLX1 , MAEA , CTBP1-AS2 , and ZNF141 as genes whose haploinsufficiency may contribute to the development of CDH.

Entities:  

Keywords:  Wolf–Hirschhorn syndrome; congenital diaphragmatic hernia; machine-learning algorithm

Year:  2018        PMID: 30430034      PMCID: PMC6234038          DOI: 10.1055/s-0038-1655755

Source DB:  PubMed          Journal:  J Pediatr Genet        ISSN: 2146-460X


  53 in total

1.  Neuroblastoma in a Child With Wolf-Hirschhorn Syndrome.

Authors:  Alper Ozcan; Hamit Acer; Saliha Ciraci; Hakan Gumus; Musa Karakukcu; Turkan Patiroglu; Mehmet A Ozdemir; Ekrem Unal
Journal:  J Pediatr Hematol Oncol       Date:  2017-05       Impact factor: 1.289

Review 2.  C-terminal binding proteins: central players in development and disease.

Authors:  Trisha R Stankiewicz; Josie J Gray; Aimee N Winter; Daniel A Linseman
Journal:  Biomol Concepts       Date:  2014-12

3.  Structural chromosome anomalies in congenital diaphragmatic hernia.

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Journal:  Prenat Diagn       Date:  1996-11       Impact factor: 3.050

Review 4.  Polygenic Causes of Congenital Diaphragmatic Hernia Produce Common Lung Pathologies.

Authors:  Patricia K Donahoe; Mauro Longoni; Frances A High
Journal:  Am J Pathol       Date:  2016-08-24       Impact factor: 4.307

5.  Generation of Fgfr3 conditional knockout mice.

Authors:  Nan Su; Xiaoling Xu; Cuiling Li; Qifen He; Ling Zhao; Can Li; Siyu Chen; Fengtao Luo; Lingxian Yi; Xiaolan Du; Haiyang Huang; Chuxia Deng; Lin Chen
Journal:  Int J Biol Sci       Date:  2010-06-15       Impact factor: 6.580

6.  Multiple congenital malformations of Wolf-Hirschhorn syndrome are recapitulated in Fgfrl1 null mice.

Authors:  Catarina Catela; Daniel Bilbao-Cortes; Esfir Slonimsky; Paschalis Kratsios; Nadia Rosenthal; Pascal Te Welscher
Journal:  Dis Model Mech       Date:  2009-04-21       Impact factor: 5.758

7.  A histone H3 lysine 36 trimethyltransferase links Nkx2-5 to Wolf-Hirschhorn syndrome.

Authors:  Keisuke Nimura; Kiyoe Ura; Hidetaka Shiratori; Masato Ikawa; Masaru Okabe; Robert J Schwartz; Yasufumi Kaneda
Journal:  Nature       Date:  2009-05-31       Impact factor: 49.962

8.  The Wolf-Hirschhorn syndrome in fetuses.

Authors:  G Tachdjian; C Fondacci; S Tapia; Y Huten; P Blot; C Nessmann
Journal:  Clin Genet       Date:  1992-12       Impact factor: 4.438

9.  Expression of FGFRL1, a novel fibroblast growth factor receptor, during embryonic development.

Authors:  Beat Trueb; Sara Taeschler
Journal:  Int J Mol Med       Date:  2006-04       Impact factor: 4.101

Review 10.  Congenital diaphragmatic hernias: from genes to mechanisms to therapies.

Authors:  Gabrielle Kardon; Kate G Ackerman; David J McCulley; Yufeng Shen; Julia Wynn; Linshan Shang; Eric Bogenschutz; Xin Sun; Wendy K Chung
Journal:  Dis Model Mech       Date:  2017-08-01       Impact factor: 5.758

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  7 in total

Review 1.  The influence of genetics in congenital diaphragmatic hernia.

Authors:  Lan Yu; Rebecca R Hernan; Julia Wynn; Wendy K Chung
Journal:  Semin Perinatol       Date:  2019-08-01       Impact factor: 3.300

Review 2.  Underlying genetic etiologies of congenital diaphragmatic hernia.

Authors:  Daryl A Scott; Yoel Gofin; Aliska M Berry; April D Adams
Journal:  Prenat Diagn       Date:  2022-01-22       Impact factor: 3.050

3.  Identifying phenotypic expansions for congenital diaphragmatic hernia plus (CDH+) using DECIPHER data.

Authors:  Amy Hardcastle; Aliska M Berry; Ian M Campbell; Xiaonan Zhao; Pengfei Liu; Amanda E Gerard; Jill A Rosenfeld; Saumya D Sisoudiya; Andres Hernandez-Garcia; Sara Loddo; Silvia Di Tommaso; Antonio Novelli; Maria L Dentici; Rossella Capolino; Maria C Digilio; Ludovico Graziani; Cecilie F Rustad; Katherine Neas; Giovanni B Ferrero; Alfredo Brusco; Eleonora Di Gregorio; Diana Wellesley; Claire Beneteau; Madeleine Joubert; Kris Van Den Bogaert; Anneleen Boogaerts; Dominic J McMullan; John Dean; Maria G Giuffrida; Laura Bernardini; Vinod Varghese; Nora L Shannon; Rachel E Harrison; Wayne W K Lam; Shane McKee; Peter D Turnpenny; Trevor Cole; Jenny Morton; Jacqueline Eason; Marilyn C Jones; Rebecca Hall; Michael Wright; Karen Horridge; Chad A Shaw; Wendy K Chung; Daryl A Scott
Journal:  Am J Med Genet A       Date:  2022-07-29       Impact factor: 2.578

4.  Evidence that FGFRL1 contributes to congenital diaphragmatic hernia development in humans.

Authors:  Yoel Gofin; Laura Palmer Mackay; Keren Machol; Sundeep Keswani; Lorraine Potocki; Eleonora Di Gregorio; Valeria Giorgia Naretto; Alfredo Brusco; Andres Hernandez-Garcia; Daryl A Scott
Journal:  Am J Med Genet A       Date:  2021-01-14       Impact factor: 2.802

5.  Clinical exome sequencing data reveal high diagnostic yields for congenital diaphragmatic hernia plus (CDH+) and new phenotypic expansions involving CDH.

Authors:  Tiana M Scott; Ian M Campbell; Andres Hernandez-Garcia; Seema R Lalani; Pengfei Liu; Chad A Shaw; Jill A Rosenfeld; Daryl A Scott
Journal:  J Med Genet       Date:  2021-01-18       Impact factor: 6.318

6.  A maChine and deep Learning Approach to predict pulmoNary hyperteNsIon in newbornS with congenital diaphragmatic Hernia (CLANNISH): Protocol for a retrospective study.

Authors:  Ilaria Amodeo; Giorgio De Nunzio; Genny Raffaeli; Irene Borzani; Alice Griggio; Luana Conte; Francesco Macchini; Valentina Condò; Nicola Persico; Isabella Fabietti; Stefano Ghirardello; Maria Pierro; Benedetta Tafuri; Giuseppe Como; Donato Cascio; Mariarosa Colnaghi; Fabio Mosca; Giacomo Cavallaro
Journal:  PLoS One       Date:  2021-11-09       Impact factor: 3.240

Review 7.  From Wolf-Hirschhorn syndrome to NSD2 haploinsufficiency: a shifting paradigm through the description of a new case and a review of the literature.

Authors:  Luisa Cortellazzo Wiel; Irene Bruno; Egidio Barbi; Fabio Sirchia
Journal:  Ital J Pediatr       Date:  2022-05-12       Impact factor: 3.288

  7 in total

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