| Literature DB >> 30429902 |
Piotr Gronek1, Joanna Gronek1, Ewelina Lulińska-Kuklik2, Michał Spieszny3, Marta Niewczas4, Mariusz Kaczmarczyk2, Miroslav Petr5, Patricia Fischerova6, Ildus I Ahmetov7, Piotr Żmijewski8.
Abstract
The purpose of this study was to investigate individually and in combination the association between the ACE (I/D), NOS3 (Glu298Asp), BDKRB2 (-9/+9), UCP2 (Ala55Val) and AMPD1 (Gln45Ter) variants with endurance performance in a large, performance-homogenous cohort of elite Polish half marathoners. The study group consisted of 180 elite half marathoners: 76 with time < 100 minutes and 104 with time > 100 minutes. DNA of the subjects was extracted from buccal cells donated by the runners and genotyping was carried out using an allelic discrimination assay with a C1000 Touch Thermal Cycler (Bio-Rad, Germany) instrument with TaqMan® probes (NOS3, UCP2, and AMPD1) and a T100™ Thermal Cycler (Bio-Rad, Germany) instrument (ACE and BDKRB2). We found that the UCP2 Ala55Val polymorphism was associated with running performance, with the subjects carrying the Val allele being overrepresented in the group of most successful runners (<100 min) compared to the >100 min group (84.2 vs. 55.8%; OR = 4.23, p < 0.0001). Next, to assess the combined impact of 4 gene polymorphisms, all athletes were classified according to the number of 'endurance' alleles (ACE I, NOS3 Glu, BDKRB2 -9, UCP2 Val) they possessed. The proportion of subjects with a high (4-7) number of 'endurance' alleles was greater in the better half marathoners group compared with the >100 min group (73.7 vs. 51.9%; OR = 2.6, p = 0.0034). These data suggest that the likelihood of becoming an elite half marathoner partly depends on the carriage of a high number of endurance-related alleles.Entities:
Keywords: endurance performance; gene polymorphism; gene-gene interaction; half marathoners
Year: 2018 PMID: 30429902 PMCID: PMC6231335 DOI: 10.1515/hukin-2017-0204
Source DB: PubMed Journal: J Hum Kinet ISSN: 1640-5544 Impact factor: 2.193
Genotypes and alleles in the half-marathon runners with respect to finish time.
| Group (HWE) | II ( n = 50) | ID (n = 81) | DD (n = 49) | I | D |
|---|---|---|---|---|---|
| <100 ( | |||||
| 24 (31.6%) | 35 (46.1%) | 17 (22.4%) | 83 (54.6%) | 69 (45.4%) | |
| (n = 76) | |||||
| >100 ( | 26 (25.0%) | 46 (44.2%) | 32 (30.8%) | 98 (47.1%) | 110 (52.9%) |
| (n = 104) | |||||
| -/- (n = 32) | +/- (n = 85) | +/+ (n = 63) | - | + | |
| <100 ( | 14 (18.4%) | 40 (52.6%) | 22 (29.0%) | 68 (44.7%) | 84 (55.3%) |
| >100 ( | 18 (17.3%) | 45 (43.3%) | 41 (39.4%) | 81 (38.9%) | (61.1127%) |
| Glu/Glu (n = 88) | Glu/Asp (n = 76) | Asp/Asp (n = 16) | Glu | Asp | |
| <100 ( | 38 (50.0%) | 30 (39.5%) | 8 (10.5%) | (69.7106 %) | 46 (30.3%) |
| >100 ( | 50 (48.1%) | 46 (44.2%) | 8 (7.7%) | (70.2146 %) | 62 (29.8%) |
| CC (n = 136) | CT (n = 44) | TT (n = 0) | C | T | |
| <100 ( | 45 (59.2%) | 31 (40.8%) | 0 (0) | (79.6121 %) | 31 (20.4%) |
| >100 ( | 91 (87.5%) | 13 (12.5%) | 0 (0) | (93.8195 %) | 13 (6.3%) |
| CC (n = 58) | CT (n = 96) | TT (n = 26) | C | T | |
| <100 ( | 12 (15.8%) | 54 (71.1%) | 10 (13.2%) | 78 (51.3%) | 74 (48.7%) |
| >100 ( | 46 (44.2%) | 42 (40.4%) | 16 (15.4%) | (64.4134 %) | 74 (35.6%) |
Figure 1Interaction map using entropy-based measure of information gain. Percentages indicate the amount of entropy removed by each polymorphism and each pairwise combination of polymorphisms. Positive values (orange, red lines) reflect synergistic interaction, negative values (blue, green lines) indicate redundancy. Near zero values (brown line) indicate independence.
Multilocus interaction models constructed using the MDR method
| Model | CV Consistency | Testing accuracy | p |
|---|---|---|---|
| 10 | 69.5% | 0.001 | |
| 10 | 79% | 0.001 | |
| 10 | 76.9% | 0.001 |
CV – cross-validation,
empirical p value based on 1000 permutations
Figure 2Graphical model of multilocus association between BDKRB2, AMPD1, UCP2 polymorphisms and half-marathon finish time (<100 vs >100 min). Dark-shaded areas represent <100 level of the new attribute, while light-shaded areas represent runners with finish time >100. Left bars - the number of runners <100, right bars - the number of runners >100.
Figure 3Interaction map using entropy-based measure of information gain of the best multilocus model selected using the MDR method