| Literature DB >> 30419731 |
Thi Bich Nga Nguyen1, Nguyen Van De2, Thi Kim Lan Nguyen3, Huynh Hong Quang4, Huong Thi Thanh Doan1, Takeshi Agatsuma5, Thanh Hoa Le1.
Abstract
The aim of this study is to delineate 'admixed hybrid' and 'introgressive' Fasciola genotypes present in the Fasciola population in Vietnam. Adult liver flukes collected from ruminants in 18 Provinces were morphologically sorted out by naked eyes for small (S), medium (M) and large (L) body shapes; and human samples (n=14) from patients. Nuclear ribosomal (rDNA) ITS1 and ITS2, and mitochondrial (mtDNA) nad1 markers were used for determination of their genetic status. Total 4,725 worm samples of ruminants were tentatively classified by their size: 6% (n=284) small (S)-, 13% (n=614) medium (M)-, and 81% (n=3,827) large (L)-forms. All the representative (n=120, as 40 each group) and 14 human specimens, possessed maternal mtDNA of only F. gigantica and none of F. hepatica. Paternally, all (100%) of the L-(n=40) and 77.5% (n=31) of the M-flukes had single F. gigantica rDNA indicating 'pure' F. gigantica. A majority (90%, n=36) of the S- and 15% (n=6) of the M-worms had single F. hepatica rDNA, indicating their introgressive; the rest (10%, n=4) of the S- and 7.5% (n=3) of the M-flukes had mixture of both F. gigantica and F. hepatica rDNAs, confirming their admixed hybrid genetic status. Fourteen human samples revealed 9 (64%) of pure F. gigantica, 3 (22%) of introgressive and 2 (14%) of admixed hybrid Fasciola spp. By the present study, it was confirmed that the small worms, which are morphologically identical with F. hepatica, are admixed and/or introgressive hybrids of Fasciola spp., and able to be the pathogens of human fascioliasis.Entities:
Keywords: F. hepatica ; Fasciola gigantica ; Vietnam; admixed hybrid/introgressive Fasciola spp.
Mesh:
Substances:
Year: 2018 PMID: 30419731 PMCID: PMC6243193 DOI: 10.3347/kjp.2018.56.5.453
Source DB: PubMed Journal: Korean J Parasitol ISSN: 0023-4001 Impact factor: 1.341
No. of Fasciola samples collected from Northern and Central Provinces in Vietnam from ruminants and humans
| Provinces | Ruminants | Humans | |
|---|---|---|---|
| 1 | Cao Bang | 95 | |
| 2 | Lang Son | 121 | |
| 3 | Bac Kan | 56 | |
| 4 | Yen Bai | 98 | |
| 5 | Thai Nguyen | 2,170 | |
| 6 | Ha Noi | 772 | 6 |
| 7 | Hung Yen | 135 | |
| 8 | Hai Duong | 88 | |
| 9 | Ninh Binh | 218 | |
| 10 | Nghe An | 94 | 1 |
| 11 | Ha Tinh | 66 | |
| 12 | Thua Thien-Hue | 123 | 1 |
| 13 | Quang Nam | 36 | 1 |
| 14 | Binh Dinh | 125 | 3 |
| 15 | Phu Yen | 104 | |
| 16 | Khanh Hoa | 188 | 1 |
| 17 | Dak Lak | 79 | |
| 18 | Ninh Thuan | 157 | |
| 19 | Quang Binh | 1 | |
| Total | 4,725 | 14 |
Primer sequences used for amplification and sequencing internal transcribed spacers (ITS) and mitochondrial nad1 gene for molecular discrimination of Fasciola species
| Genomic origin | Regions/Genes used in this study | Forward | Reverse | Length of amplicons (bp) | ||
|---|---|---|---|---|---|---|
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| Name | Sequence (5′ to 3′) | Name | Sequence (5′ to 3′) | |||
| Nuclear ribosomal transcription unit (rTU or rDNA) | ITS1(421 bp) | U18S2F | TCGTGACTGGGATCGGGGC | U3SR | CGACCCTCGGACAGGCG | 852 |
| ITS1-5.8S-ITS2 | U18S2F | TCGTGACTGGGATCGGGGC | U28S2R | GACCTTGGAGTCGGGTTGT | 1,519–1,520 | |
| ITS2 (361–362 bp) | U3SF | CGGTGGATCACTCGGCTCGTG | U28S2R | GACCTTGGAGTCGGGTTGT | 811–812 | |
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| Mitochondrial genome (mtDNA) | FANDF | AGATGTGTGCTCTGCGAGC | FANDR | GAGTTGRCTGGCCGGTA | 1,170 | |
F, Forward; R, Reverse.
A partial sequence (535 bp) of nad1 gene was used for haplogroup analysis.
List of nad1 reference sequences and their accession numbers from GenBank and published database used for phylogenetic analysis of F. gigantica haplogroups in the present study
| Species | Country/Accession number | References and GenBank |
|---|---|---|
|
| ||
| Haplogroups | ||
| Haplogroup A | Bangladesh (AB894370); India (LC012900; LC128314); Nepal (AB894337; AB894338); Myanmar (AB604022); | [ |
| Haplogroup B | India (LC012897; LC012899); Myanmar (AB604007); Thailand (AB603724); | |
| Haplogroup C | China (AB477364; AB477369); Indonesia (LC127274; LC127264); Vietnam (AB385616); | |
| Haplogroup D | Egypt (LC076199; LC076204; AB554156; AB554167; AB554194); | |
| Haplogroup E | Zambia (AB983823; AB983824; AB983832; AB983833; AB983835) | |
| Unclassified | China (AB477368; AB604941; AB604939; AB604932); Myanmar (AB604020); Japan (AB207168); Korea (AB211240); Vietnam (MF430851; MF430852; MF430854; AB385619; AB536756; MF430855; MF287790; AB385617; MF430855); | GenBank |
| Australia (AF216697); China (AB477359); Egypt (AB554179); Ireland (AB207156); Peru (LC070666); Spain (KF111652); Uruguay (AB207154) | [ | |
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| Korea (AF219379) | GenBank | |
Haplogroups suggested by Amer et al. [7].
Fig. 1Representative adult individuals sorted out for groups of small (S), medium (M) and large (L) shaped Fasciola liver flukes based on morphological examination by their size and the inferred ratio (BL/BW) between the body length (BL) and body width (BW). Size is indicated by a bar (1.2 cm). (A) fresh; (B) preserved flukes.
No. of small (S), medium (M) and large (L) individual shapes based on morphological examination of flukes present in the Fasciola spp. population (n=4,725 adults) from ruminants
| Physical examination | No. | Size (cm) | Inferred ratio (BL/BW) | % |
|---|---|---|---|---|
| S (Small) | (n=284) | 2.0–3.6×1.3 | 1.54–2.77/1 | 6 |
| M (Medium) | (n=614) | 3.6–4.2×1.3 | 2.77–3.23/1 | 13 |
| L (Large) | (n=3,827) | 4.2–6.5×1.2 | 3.23–5.4/1 | 81 |
| Total | (n=4,725) | 100 |
BL, body length; BW, body width.
Molecular delineation of Fasciola species and types of hybridization among S-, M- and L-shaped liver flukes from ruminants and human samples in Vietnam based on the key nucleotide markers of ITS1 and ITS2 and mitochondrial nad1
| ITS1 | ITS2 | rDNA status | No. of liver flukes from ruminants | mtDNA status ( | Delineation of | No. of samples from humans (%) | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| 17 | 107 | 201 | 279 | 299 | 327 | L (n=40) (%) | M (n=40) (%) | S (n=40) (%) | ||||
| T | T | T | A | T | - | Fgig | 40/(100) | 31 (77.5) | 0 | Fgig | 9 (64.0) | |
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| C | A | C | T | C | T | Fhep | 0 | 6 (15.0) | 36 (90.0) | Fgig | Introgressive | 3 (22.0) |
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| Y | W | Y | W | Y | -/T | Mixed (Fhep/Fgig) | 0 | 3 (7.5) | 4 (10.0) | Fgig | Admixed | 2 (14.0) |
ITS1, ITS2, internal transcribed spacer 1 and 2; Fhep, F. hepatica; F. gigantica; rDNA, ribosomal DNA; mtDNA, mitochondrial DNA; S, small; M, medium, L, large shape; Y, T or C; W, T or A.
299: F. hepatica possesses GTAC-sequence for a RsaI(+) at positions 296–299 in ITS1, while F. gigantica does not (GTAT/(RsaI(−));
327: At position 327 in ITS2, a nucleotide T (Thymine) present in F. hepatica and absent in F. gigantica [11,21,37].
Fig. 2Phylogenetic tree showing topology of haplogroup relationships of Fasciola spp. from Vietnam and the reference isolates/strains from GenBank (Table 3) based on analysis of partial mitochondrial nad1 nucleotide sequence data (535 nucleotides) using Paragonimus westermani as an outgroup. Phylogenetic tree reconstruction was performed by MEGA 7.0 using a maximum likelihood (ML) analysis based on the general time-reversible model; supported for each node by 1,000 bootstrap resamplings [32]. In each sequence, species abbreviation is followed-up by strain and country (where the fluke was isolated). Names of haplogroups are included for reference (in brackets). Accession numbers are given at the end of each sequence. Basal node for F. gigantica is indicated by an arrow. Fasciola spp. sequences of this study from Vietnam are indicated by solid circles. Fsp: Fasciola species indicating intermediate forms (admixed/introgressive); number in bracket: identical nad1 sequences obtained in this study.